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Cluster: Rep_988_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_988_c_15 Rep_988_c_15_634 677894 679384 + GH13_5
pfam Rep_988_c_15 Rep_988_c_15_635 679487 679900 - YedD
pfam Rep_988_c_15 Rep_988_c_15_636 679975 680289 - FliE
TC Rep_988_c_15 Rep_988_c_15_637 680518 682197 + 3.A.6.2.1
pfam Rep_988_c_15 Rep_988_c_15_638 682190 683188 + FliG_C | FliG_M | FliG_N
TC Rep_988_c_15 Rep_988_c_15_639 683181 683888 + 3.A.6.2.1
TC Rep_988_c_15 Rep_988_c_15_640 683888 685258 + 3.A.6.2.1
Gene ID: Rep_988_c_15_634
Type: CAZyme
Location: 677894 - 679384 (+)
Gene ID: Rep_988_c_15_635
Type: pfam
Location: 679487 - 679900 (-)
Gene ID: Rep_988_c_15_636
Type: pfam
Location: 679975 - 680289 (-)
Gene ID: Rep_988_c_15_637
Type: TC
Location: 680518 - 682197 (+)
Gene ID: Rep_988_c_15_638
Type: pfam
Location: 682190 - 683188 (+)
Gene ID: Rep_988_c_15_639
Type: TC
Location: 683181 - 683888 (+)
Gene ID: Rep_988_c_15_640
Type: TC
Location: 683888 - 685258 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_15_635 vegetarian > vegan 1.60597 0.04151

🧭 Explore Read Mapping of CGC

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