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Cluster: Rep_988_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_988_c_15 Rep_988_c_15_592 636268 637692 - GT20
pfam Rep_988_c_15 Rep_988_c_15_593 637667 638470 - Trehalose_PPase
TC Rep_988_c_15 Rep_988_c_15_594 638647 639633 - 3.A.1.2.2
TC Rep_988_c_15 Rep_988_c_15_595 639648 641162 - 3.A.1.2.2
TC Rep_988_c_15 Rep_988_c_15_596 641234 642223 - 3.A.1.2.2
pfam Rep_988_c_15 Rep_988_c_15_597 643012 643515 + Ferritin
TC Rep_988_c_15 Rep_988_c_15_598 644073 645416 + 2.A.13.1.2
Gene ID: Rep_988_c_15_592
Type: CAZyme
Location: 636268 - 637692 (-)
Gene ID: Rep_988_c_15_593
Type: pfam
Location: 637667 - 638470 (-)
Gene ID: Rep_988_c_15_594
Type: TC
Location: 638647 - 639633 (-)
Gene ID: Rep_988_c_15_595
Type: TC
Location: 639648 - 641162 (-)
Gene ID: Rep_988_c_15_596
Type: TC
Location: 641234 - 642223 (-)
Gene ID: Rep_988_c_15_597
Type: pfam
Location: 643012 - 643515 (+)
Gene ID: Rep_988_c_15_598
Type: TC
Location: 644073 - 645416 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_15_593 vegetarian > omnivore 1.24129 0.03403
Rep_988_c_15_593 vegetarian > vegan 1.57218 0.04151
Rep_988_c_15_595 vegetarian > vegan 1.39548 0.04151

🧭 Explore Read Mapping of CGC

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