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Cluster: Rep_988_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_988_c_15 Rep_988_c_15_107 111203 114343 - 2.A.6.1.3
TC Rep_988_c_15 Rep_988_c_15_108 114354 115604 - 2.A.6.1.4
pfam Rep_988_c_15 Rep_988_c_15_109 115616 115957 - CusF_Ec
TC Rep_988_c_15 Rep_988_c_15_110 115986 117371 - 1.B.17.3.4
TF Rep_988_c_15 Rep_988_c_15_111 117534 118217 + Trans_reg_C
TC Rep_988_c_15 Rep_988_c_15_112 118207 119661 + 2.A.21.9.1
TF Rep_988_c_15 Rep_988_c_15_113 119666 120571 - HTH_1
TC Rep_988_c_15 Rep_988_c_15_114 120689 122089 + 2.A.1.3.17
pfam Rep_988_c_15 Rep_988_c_15_115 122129 122614 - T6SS_HCP
pfam Rep_988_c_15 Rep_988_c_15_116 123713 124708 - DUF2891
TC Rep_988_c_15 Rep_988_c_15_117 124718 125704 - 9.B.211.1.1
pfam Rep_988_c_15 Rep_988_c_15_118 125701 126423 - DUF969
TF Rep_988_c_15 Rep_988_c_15_119 126623 127168 + 0042156
CAZyme Rep_988_c_15 Rep_988_c_15_120 127171 129246 - CBM48 | GH13_11
CAZyme Rep_988_c_15 Rep_988_c_15_121 129262 131730 - GH13_26
CAZyme Rep_988_c_15 Rep_988_c_15_122 131727 133514 - GH13_10
Gene ID: Rep_988_c_15_107
Type: TC
Location: 111203 - 114343 (-)
Gene ID: Rep_988_c_15_108
Type: TC
Location: 114354 - 115604 (-)
Gene ID: Rep_988_c_15_109
Type: pfam
Location: 115616 - 115957 (-)
Gene ID: Rep_988_c_15_110
Type: TC
Location: 115986 - 117371 (-)
Gene ID: Rep_988_c_15_111
Type: TF
Location: 117534 - 118217 (+)
Gene ID: Rep_988_c_15_112
Type: TC
Location: 118207 - 119661 (+)
Gene ID: Rep_988_c_15_113
Type: TF
Location: 119666 - 120571 (-)
Gene ID: Rep_988_c_15_114
Type: TC
Location: 120689 - 122089 (+)
Gene ID: Rep_988_c_15_115
Type: pfam
Location: 122129 - 122614 (-)
Gene ID: Rep_988_c_15_116
Type: pfam
Location: 123713 - 124708 (-)
Gene ID: Rep_988_c_15_117
Type: TC
Location: 124718 - 125704 (-)
Gene ID: Rep_988_c_15_118
Type: pfam
Location: 125701 - 126423 (-)
Gene ID: Rep_988_c_15_119
Type: TF
Location: 126623 - 127168 (+)
Gene ID: Rep_988_c_15_120
Type: CAZyme
Location: 127171 - 129246 (-)
Gene ID: Rep_988_c_15_121
Type: CAZyme
Location: 129262 - 131730 (-)
Gene ID: Rep_988_c_15_122
Type: CAZyme
Location: 131727 - 133514 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_15_116 vegetarian > vegan 1.78611 0.04151
Rep_988_c_15_120 vegetarian > omnivore 2.52863 0.03403
Rep_988_c_15_120 vegetarian > vegan 2.13802 0.04151
Rep_988_c_15_121 vegetarian > omnivore 1.63697 0.03403
Rep_988_c_15_122 vegetarian > omnivore 1.91256 0.03403

🧭 Explore Read Mapping of CGC

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