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Cluster: Rep_988_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_988_c_1 Rep_988_c_1_72 79669 80718 - 2.A.86.1.2
TC Rep_988_c_1 Rep_988_c_1_73 80864 82081 + 2.A.1.46.7
pfam Rep_988_c_1 Rep_988_c_1_74 82086 82643 - DcrB
TC Rep_988_c_1 Rep_988_c_1_75 82716 83381 - 2.A.88.8.6
pfam Rep_988_c_1 Rep_988_c_1_76 83549 83791 + TusA
TC Rep_988_c_1 Rep_988_c_1_77 83896 84489 - 2.A.95.1.5
pfam Rep_988_c_1 Rep_988_c_1_78 84669 85772 + Semialdhyde_dh | Semialdhyde_dhC
CAZyme Rep_988_c_1 Rep_988_c_1_79 85932 88208 + CBM48 | GH13_9
CAZyme Rep_988_c_1 Rep_988_c_1_80 88205 90178 + CBM48 | GH13_11
pfam Rep_988_c_1 Rep_988_c_1_81 90196 91491 + NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme Rep_988_c_1 Rep_988_c_1_82 91491 92924 + GT5
CAZyme Rep_988_c_1 Rep_988_c_1_83 92943 95390 + GT35
pfam Rep_988_c_1 Rep_988_c_1_84 95479 96987 - DAO | DAO_C
STP Rep_988_c_1 Rep_988_c_1_85 97238 97570 + Rhodanese
TC Rep_988_c_1 Rep_988_c_1_86 97618 98448 + 9.B.104.1.1
TF Rep_988_c_1 Rep_988_c_1_87 98465 99223 + HTH_DeoR
TF Rep_988_c_1 Rep_988_c_1_88 99322 102027 - GerE
CAZyme Rep_988_c_1 Rep_988_c_1_89 102614 105007 + GT35
CAZyme Rep_988_c_1 Rep_988_c_1_90 105017 107095 + GH77
TC Rep_988_c_1 Rep_988_c_1_91 107208 108524 - 2.A.8.1.4
Gene ID: Rep_988_c_1_72
Type: TC
Location: 79669 - 80718 (-)
Gene ID: Rep_988_c_1_73
Type: TC
Location: 80864 - 82081 (+)
Gene ID: Rep_988_c_1_74
Type: pfam
Location: 82086 - 82643 (-)
Gene ID: Rep_988_c_1_75
Type: TC
Location: 82716 - 83381 (-)
Gene ID: Rep_988_c_1_76
Type: pfam
Location: 83549 - 83791 (+)
Gene ID: Rep_988_c_1_77
Type: TC
Location: 83896 - 84489 (-)
Gene ID: Rep_988_c_1_78
Type: pfam
Location: 84669 - 85772 (+)
Gene ID: Rep_988_c_1_79
Type: CAZyme
Location: 85932 - 88208 (+)
Gene ID: Rep_988_c_1_80
Type: CAZyme
Location: 88205 - 90178 (+)
Gene ID: Rep_988_c_1_81
Type: pfam
Location: 90196 - 91491 (+)
Gene ID: Rep_988_c_1_82
Type: CAZyme
Location: 91491 - 92924 (+)
Gene ID: Rep_988_c_1_83
Type: CAZyme
Location: 92943 - 95390 (+)
Gene ID: Rep_988_c_1_84
Type: pfam
Location: 95479 - 96987 (-)
Gene ID: Rep_988_c_1_85
Type: STP
Location: 97238 - 97570 (+)
Gene ID: Rep_988_c_1_86
Type: TC
Location: 97618 - 98448 (+)
Gene ID: Rep_988_c_1_87
Type: TF
Location: 98465 - 99223 (+)
Gene ID: Rep_988_c_1_88
Type: TF
Location: 99322 - 102027 (-)
Gene ID: Rep_988_c_1_89
Type: CAZyme
Location: 102614 - 105007 (+)
Gene ID: Rep_988_c_1_90
Type: CAZyme
Location: 105017 - 107095 (+)
Gene ID: Rep_988_c_1_91
Type: TC
Location: 107208 - 108524 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_1_72 vegetarian > omnivore 1.19951 0.03403

🧭 Explore Read Mapping of CGC

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