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Cluster: Rep_988_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_988_c_14 Rep_988_c_14_755 779730 781559 - CBM73 | GH19
CAZyme Rep_988_c_14 Rep_988_c_14_756 781702 782154 - GH23
CAZyme Rep_988_c_14 Rep_988_c_14_757 782288 785056 - GH18
TC Rep_988_c_14 Rep_988_c_14_758 785316 786113 - 3.A.15.2.1
pfam Rep_988_c_14 Rep_988_c_14_759 786110 786595 - T2SSM
pfam Rep_988_c_14 Rep_988_c_14_760 786592 787737 - T2SSL | GspL_C
TC Rep_988_c_14 Rep_988_c_14_761 787753 788772 - 3.A.15.1.1
TC Rep_988_c_14 Rep_988_c_14_762 788769 789449 - 3.A.15.1.1
pfam Rep_988_c_14 Rep_988_c_14_763 789442 789825 - T2SSI | N_methyl
TC Rep_988_c_14 Rep_988_c_14_764 789818 790303 - 3.A.15.1.1
TC Rep_988_c_14 Rep_988_c_14_765 790303 790752 - 3.A.15.1.1
TC Rep_988_c_14 Rep_988_c_14_766 790755 791963 - 3.A.15.1.1
TC Rep_988_c_14 Rep_988_c_14_767 791963 793441 - 3.A.15.1.1
TC Rep_988_c_14 Rep_988_c_14_768 793454 795379 - 1.B.22.1.1
Gene ID: Rep_988_c_14_755
Type: CAZyme
Location: 779730 - 781559 (-)
Gene ID: Rep_988_c_14_756
Type: CAZyme
Location: 781702 - 782154 (-)
Gene ID: Rep_988_c_14_757
Type: CAZyme
Location: 782288 - 785056 (-)
Gene ID: Rep_988_c_14_758
Type: TC
Location: 785316 - 786113 (-)
Gene ID: Rep_988_c_14_759
Type: pfam
Location: 786110 - 786595 (-)
Gene ID: Rep_988_c_14_760
Type: pfam
Location: 786592 - 787737 (-)
Gene ID: Rep_988_c_14_761
Type: TC
Location: 787753 - 788772 (-)
Gene ID: Rep_988_c_14_762
Type: TC
Location: 788769 - 789449 (-)
Gene ID: Rep_988_c_14_763
Type: pfam
Location: 789442 - 789825 (-)
Gene ID: Rep_988_c_14_764
Type: TC
Location: 789818 - 790303 (-)
Gene ID: Rep_988_c_14_765
Type: TC
Location: 790303 - 790752 (-)
Gene ID: Rep_988_c_14_766
Type: TC
Location: 790755 - 791963 (-)
Gene ID: Rep_988_c_14_767
Type: TC
Location: 791963 - 793441 (-)
Gene ID: Rep_988_c_14_768
Type: TC
Location: 793454 - 795379 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_14_766 vegetarian > omnivore 1.03460 0.03403
Rep_988_c_14_768 vegetarian > omnivore 1.74166 0.03403

🧭 Explore Read Mapping of CGC

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