Cluster: Rep_988_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_988
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_988_c_14 | Rep_988_c_14_338 | 349157 | 350272 | + | 2.A.86.2.1 |
| CAZyme | Rep_988_c_14 | Rep_988_c_14_339 | 350595 | 352970 | - | GH3 |
| TC | Rep_988_c_14 | Rep_988_c_14_340 | 352974 | 354374 | - | 2.A.2.3.5 |
| TC | Rep_988_c_14 | Rep_988_c_14_341 | 354608 | 356986 | - | 8.A.7.1.4 |
| pfam | Rep_988_c_14 | Rep_988_c_14_342 | 357322 | 358155 | + | Kinase-PPPase |
| pfam | Rep_988_c_14 | Rep_988_c_14_343 | 358308 | 359354 | + | DAHP_synth_1 |
| TC | Rep_988_c_14 | Rep_988_c_14_344 | 359824 | 361806 | + | 1.B.14.2.14 |
| pfam | Rep_988_c_14 | Rep_988_c_14_345 | 361842 | 362870 | + | HemS | HemS | ChuX_HutX | ChuX_HutX |
| TC | Rep_988_c_14 | Rep_988_c_14_346 | 362867 | 363685 | + | 3.A.1.14.16 |
| TC | Rep_988_c_14 | Rep_988_c_14_347 | 363685 | 364677 | + | 3.A.1.14.5 |
| TC | Rep_988_c_14 | Rep_988_c_14_348 | 364670 | 365449 | + | 3.A.1.14.16 |
Gene ID: Rep_988_c_14_338
Type: TC
Location: 349157 - 350272 (+)
Type: TC
Location: 349157 - 350272 (+)
Gene ID: Rep_988_c_14_339
Type: CAZyme
Location: 350595 - 352970 (-)
Type: CAZyme
Location: 350595 - 352970 (-)
Gene ID: Rep_988_c_14_340
Type: TC
Location: 352974 - 354374 (-)
Type: TC
Location: 352974 - 354374 (-)
Gene ID: Rep_988_c_14_341
Type: TC
Location: 354608 - 356986 (-)
Type: TC
Location: 354608 - 356986 (-)
Gene ID: Rep_988_c_14_342
Type: pfam
Location: 357322 - 358155 (+)
Type: pfam
Location: 357322 - 358155 (+)
Gene ID: Rep_988_c_14_343
Type: pfam
Location: 358308 - 359354 (+)
Type: pfam
Location: 358308 - 359354 (+)
Gene ID: Rep_988_c_14_344
Type: TC
Location: 359824 - 361806 (+)
Type: TC
Location: 359824 - 361806 (+)
Gene ID: Rep_988_c_14_345
Type: pfam
Location: 361842 - 362870 (+)
Type: pfam
Location: 361842 - 362870 (+)
Gene ID: Rep_988_c_14_346
Type: TC
Location: 362867 - 363685 (+)
Type: TC
Location: 362867 - 363685 (+)
Gene ID: Rep_988_c_14_347
Type: TC
Location: 363685 - 364677 (+)
Type: TC
Location: 363685 - 364677 (+)
Gene ID: Rep_988_c_14_348
Type: TC
Location: 364670 - 365449 (+)
Type: TC
Location: 364670 - 365449 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter cloacae_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_988_c_14_339 | vegetarian > omnivore | 1.19995 | 0.03403 |
| Rep_988_c_14_339 | vegetarian > vegan | 1.54959 | 0.04151 |
| Rep_988_c_14_340 | vegetarian > vegan | 1.37929 | 0.04151 |
| Rep_988_c_14_344 | vegan > omnivore | 1.03656 | 0.04033 |
| Rep_988_c_14_345 | vegetarian > omnivore | 1.56070 | 0.03403 |
| Rep_988_c_14_345 | vegetarian > vegan | 1.36469 | 0.04151 |