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Cluster: Rep_988_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_988_c_1 Rep_988_c_1_47 57443 58426 + GT2
pfam Rep_988_c_1 Rep_988_c_1_48 58423 60405 + Formyl_trans_N | 3Beta_HSD | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam Rep_988_c_1 Rep_988_c_1_49 60402 61304 + Polysacc_deac_1
CAZyme Rep_988_c_1 Rep_988_c_1_50 61301 62956 + GT83
TC Rep_988_c_1 Rep_988_c_1_51 62956 63291 + 2.A.7.22.2
TC Rep_988_c_1 Rep_988_c_1_52 63288 63677 + 2.A.7.22.1
Gene ID: Rep_988_c_1_47
Type: CAZyme
Location: 57443 - 58426 (+)
Gene ID: Rep_988_c_1_48
Type: pfam
Location: 58423 - 60405 (+)
Gene ID: Rep_988_c_1_49
Type: pfam
Location: 60402 - 61304 (+)
Gene ID: Rep_988_c_1_50
Type: CAZyme
Location: 61301 - 62956 (+)
Gene ID: Rep_988_c_1_51
Type: TC
Location: 62956 - 63291 (+)
Gene ID: Rep_988_c_1_52
Type: TC
Location: 63288 - 63677 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_1_47 vegetarian > omnivore 1.83385 0.03403

🧭 Explore Read Mapping of CGC

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