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Cluster: Rep_988_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_988_c_6 Rep_988_c_6_522 545106 545399 - 3.A.1.27.3
TC Rep_988_c_6 Rep_988_c_6_523 545399 546034 - 3.A.1.27.3
TC Rep_988_c_6 Rep_988_c_6_524 546053 546601 - 3.A.1.27.3
TC Rep_988_c_6 Rep_988_c_6_525 546606 547388 - 3.A.1.27.3
TC Rep_988_c_6 Rep_988_c_6_526 547396 548208 - 3.A.1.27.3
TC Rep_988_c_6 Rep_988_c_6_527 548436 549413 + 2.A.19.5.1
STP Rep_988_c_6 Rep_988_c_6_528 549427 550413 + CBS | CBS | SIS
pfam Rep_988_c_6 Rep_988_c_6_529 550428 550994 + Hydrolase_3
TC Rep_988_c_6 Rep_988_c_6_530 550991 551566 + 1.B.42.1.2
TC Rep_988_c_6 Rep_988_c_6_531 551535 552089 + 1.B.42.1.2
TC Rep_988_c_6 Rep_988_c_6_532 552096 552821 + 1.B.42.1.2
pfam Rep_988_c_6 Rep_988_c_6_533 552869 554302 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam Rep_988_c_6 Rep_988_c_6_534 554325 554612 + Ribosomal_S30AE
TC Rep_988_c_6 Rep_988_c_6_535 554695 555186 + 4.A.2.1.4
pfam Rep_988_c_6 Rep_988_c_6_536 555232 556086 + RapZ-like_N | PapZ_C
TC Rep_988_c_6 Rep_988_c_6_537 556083 556355 + 8.A.8.1.5
CAZyme Rep_988_c_6 Rep_988_c_6_538 556395 557120 - GT51
peptidase Rep_988_c_6 Rep_988_c_6_539 557117 557773 - C56.975
STP Rep_988_c_6 Rep_988_c_6_540 558003 560336 - HATPase_c | HisKA | PAS | Response_reg
TC Rep_988_c_6 Rep_988_c_6_541 560472 561554 - 1.B.42.1.2
TC Rep_988_c_6 Rep_988_c_6_542 561554 562654 - 1.B.42.1.2
Gene ID: Rep_988_c_6_522
Type: TC
Location: 545106 - 545399 (-)
Gene ID: Rep_988_c_6_523
Type: TC
Location: 545399 - 546034 (-)
Gene ID: Rep_988_c_6_524
Type: TC
Location: 546053 - 546601 (-)
Gene ID: Rep_988_c_6_525
Type: TC
Location: 546606 - 547388 (-)
Gene ID: Rep_988_c_6_526
Type: TC
Location: 547396 - 548208 (-)
Gene ID: Rep_988_c_6_527
Type: TC
Location: 548436 - 549413 (+)
Gene ID: Rep_988_c_6_528
Type: STP
Location: 549427 - 550413 (+)
Gene ID: Rep_988_c_6_529
Type: pfam
Location: 550428 - 550994 (+)
Gene ID: Rep_988_c_6_530
Type: TC
Location: 550991 - 551566 (+)
Gene ID: Rep_988_c_6_531
Type: TC
Location: 551535 - 552089 (+)
Gene ID: Rep_988_c_6_532
Type: TC
Location: 552096 - 552821 (+)
Gene ID: Rep_988_c_6_533
Type: pfam
Location: 552869 - 554302 (+)
Gene ID: Rep_988_c_6_534
Type: pfam
Location: 554325 - 554612 (+)
Gene ID: Rep_988_c_6_535
Type: TC
Location: 554695 - 555186 (+)
Gene ID: Rep_988_c_6_536
Type: pfam
Location: 555232 - 556086 (+)
Gene ID: Rep_988_c_6_537
Type: TC
Location: 556083 - 556355 (+)
Gene ID: Rep_988_c_6_538
Type: CAZyme
Location: 556395 - 557120 (-)
Gene ID: Rep_988_c_6_539
Type: peptidase
Location: 557117 - 557773 (-)
Gene ID: Rep_988_c_6_540
Type: STP
Location: 558003 - 560336 (-)
Gene ID: Rep_988_c_6_541
Type: TC
Location: 560472 - 561554 (-)
Gene ID: Rep_988_c_6_542
Type: TC
Location: 561554 - 562654 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_6_526 vegetarian > omnivore 1.15956 0.02878

🧭 Explore Read Mapping of CGC

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