Cluster: Rep_988_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_988
- CGC Family ID: CGCFAM_00294
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_988_c_6 | Rep_988_c_6_306 | 330896 | 331612 | + | 9.B.120.1.1 |
| NULL(UNKNOWN) | Rep_988_c_6 | Rep_988_c_6_307 | 331924 | 332316 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_988_c_6 | Rep_988_c_6_308 | 332932 | 333510 | - | GerE |
| TC | Rep_988_c_6 | Rep_988_c_6_309 | 334132 | 336570 | + | 1.B.55.1.1 |
| CAZyme | Rep_988_c_6 | Rep_988_c_6_310 | 336579 | 338516 | + | CE4 | GH153 | GH153 |
| CAZyme | Rep_988_c_6 | Rep_988_c_6_311 | 338509 | 339837 | + | GT2 |
| pfam | Rep_988_c_6 | Rep_988_c_6_312 | 339837 | 340265 | + | PgaD |
| peptidase | Rep_988_c_6 | Rep_988_c_6_313 | 340318 | 342180 | - | C51.A01 |
| TC | Rep_988_c_6 | Rep_988_c_6_314 | 342291 | 343268 | - | 3.A.1.5.20 |
| TC | Rep_988_c_6 | Rep_988_c_6_315 | 343265 | 344242 | - | 3.A.1.5.2 |
| TC | Rep_988_c_6 | Rep_988_c_6_316 | 344235 | 345080 | - | 3.A.1.5.20 |
| TC | Rep_988_c_6 | Rep_988_c_6_317 | 345086 | 346039 | - | 3.A.1.5.20 |
| TC | Rep_988_c_6 | Rep_988_c_6_318 | 346085 | 347674 | - | 3.A.1.5.20 |
Gene ID: Rep_988_c_6_306
Type: TC
Location: 330896 - 331612 (+)
Type: TC
Location: 330896 - 331612 (+)
Gene ID: Rep_988_c_6_307
Type:
Location: 331924 - 332316 (-)
Type:
Location: 331924 - 332316 (-)
Gene ID: Rep_988_c_6_308
Type: TF
Location: 332932 - 333510 (-)
Type: TF
Location: 332932 - 333510 (-)
Gene ID: Rep_988_c_6_309
Type: TC
Location: 334132 - 336570 (+)
Type: TC
Location: 334132 - 336570 (+)
Gene ID: Rep_988_c_6_310
Type: CAZyme
Location: 336579 - 338516 (+)
Type: CAZyme
Location: 336579 - 338516 (+)
Gene ID: Rep_988_c_6_311
Type: CAZyme
Location: 338509 - 339837 (+)
Type: CAZyme
Location: 338509 - 339837 (+)
Gene ID: Rep_988_c_6_312
Type: pfam
Location: 339837 - 340265 (+)
Type: pfam
Location: 339837 - 340265 (+)
Gene ID: Rep_988_c_6_313
Type: peptidase
Location: 340318 - 342180 (-)
Type: peptidase
Location: 340318 - 342180 (-)
Gene ID: Rep_988_c_6_314
Type: TC
Location: 342291 - 343268 (-)
Type: TC
Location: 342291 - 343268 (-)
Gene ID: Rep_988_c_6_315
Type: TC
Location: 343265 - 344242 (-)
Type: TC
Location: 343265 - 344242 (-)
Gene ID: Rep_988_c_6_316
Type: TC
Location: 344235 - 345080 (-)
Type: TC
Location: 344235 - 345080 (-)
Gene ID: Rep_988_c_6_317
Type: TC
Location: 345086 - 346039 (-)
Type: TC
Location: 345086 - 346039 (-)
Gene ID: Rep_988_c_6_318
Type: TC
Location: 346085 - 347674 (-)
Type: TC
Location: 346085 - 347674 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter cloacae_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_988_c_6_308 | vegetarian > omnivore | 1.09778 | 0.03403 |
| Rep_988_c_6_309 | vegetarian > omnivore | 1.50094 | 0.03403 |
| Rep_988_c_6_310 | vegetarian > omnivore | 1.38774 | 0.03403 |
| Rep_988_c_6_310 | vegetarian > vegan | 1.08155 | 0.04151 |
| Rep_988_c_6_311 | vegetarian > omnivore | 2.27679 | 0.03403 |
| Rep_988_c_6_311 | vegetarian > vegan | 1.76372 | 0.03491 |
| Rep_988_c_6_312 | vegetarian > omnivore | 1.34291 | 0.03403 |
| Rep_988_c_6_312 | vegetarian > vegan | 1.37143 | 0.04151 |