Cluster: Rep_987_CGC59
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_987
- CGC Family ID: CGCFAM_00123
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_987_c_31 | Rep_987_c_31_1 | 88 | 753 | - | 2.A.88.8.6 |
| pfam | Rep_987_c_31 | Rep_987_c_31_2 | 921 | 1163 | + | TusA |
| TC | Rep_987_c_31 | Rep_987_c_31_3 | 1228 | 1821 | - | 2.A.95.1.5 |
| pfam | Rep_987_c_31 | Rep_987_c_31_4 | 1999 | 3102 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | Rep_987_c_31 | Rep_987_c_31_5 | 3332 | 5518 | + | CBM48 | GH13_9 |
| CAZyme | Rep_987_c_31 | Rep_987_c_31_6 | 5515 | 7488 | + | GH13_11 |
| pfam | Rep_987_c_31 | Rep_987_c_31_7 | 7506 | 8801 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | Rep_987_c_31 | Rep_987_c_31_8 | 8801 | 10234 | + | GT5 |
| CAZyme | Rep_987_c_31 | Rep_987_c_31_9 | 10253 | 12700 | + | GT35 |
| pfam | Rep_987_c_31 | Rep_987_c_31_10 | 12790 | 14298 | - | DAO | DAO_C |
| STP | Rep_987_c_31 | Rep_987_c_31_11 | 14487 | 14819 | + | Rhodanese |
| TC | Rep_987_c_31 | Rep_987_c_31_12 | 14867 | 15697 | + | 9.B.104.1.1 |
| TF | Rep_987_c_31 | Rep_987_c_31_13 | 15714 | 16472 | + | HTH_DeoR |
| TF | Rep_987_c_31 | Rep_987_c_31_14 | 16570 | 19275 | - | GerE |
| CAZyme | Rep_987_c_31 | Rep_987_c_31_15 | 19860 | 22253 | + | GT35 |
| CAZyme | Rep_987_c_31 | Rep_987_c_31_16 | 22263 | 24344 | + | GH77 |
| TC | Rep_987_c_31 | Rep_987_c_31_17 | 24431 | 25747 | - | 2.A.8.1.4 |
Gene ID: Rep_987_c_31_1
Type: TC
Location: 88 - 753 (-)
Type: TC
Location: 88 - 753 (-)
Gene ID: Rep_987_c_31_2
Type: pfam
Location: 921 - 1163 (+)
Type: pfam
Location: 921 - 1163 (+)
Gene ID: Rep_987_c_31_3
Type: TC
Location: 1228 - 1821 (-)
Type: TC
Location: 1228 - 1821 (-)
Gene ID: Rep_987_c_31_4
Type: pfam
Location: 1999 - 3102 (+)
Type: pfam
Location: 1999 - 3102 (+)
Gene ID: Rep_987_c_31_5
Type: CAZyme
Location: 3332 - 5518 (+)
Type: CAZyme
Location: 3332 - 5518 (+)
Gene ID: Rep_987_c_31_6
Type: CAZyme
Location: 5515 - 7488 (+)
Type: CAZyme
Location: 5515 - 7488 (+)
Gene ID: Rep_987_c_31_7
Type: pfam
Location: 7506 - 8801 (+)
Type: pfam
Location: 7506 - 8801 (+)
Gene ID: Rep_987_c_31_8
Type: CAZyme
Location: 8801 - 10234 (+)
Type: CAZyme
Location: 8801 - 10234 (+)
Gene ID: Rep_987_c_31_9
Type: CAZyme
Location: 10253 - 12700 (+)
Type: CAZyme
Location: 10253 - 12700 (+)
Gene ID: Rep_987_c_31_10
Type: pfam
Location: 12790 - 14298 (-)
Type: pfam
Location: 12790 - 14298 (-)
Gene ID: Rep_987_c_31_11
Type: STP
Location: 14487 - 14819 (+)
Type: STP
Location: 14487 - 14819 (+)
Gene ID: Rep_987_c_31_12
Type: TC
Location: 14867 - 15697 (+)
Type: TC
Location: 14867 - 15697 (+)
Gene ID: Rep_987_c_31_13
Type: TF
Location: 15714 - 16472 (+)
Type: TF
Location: 15714 - 16472 (+)
Gene ID: Rep_987_c_31_14
Type: TF
Location: 16570 - 19275 (-)
Type: TF
Location: 16570 - 19275 (-)
Gene ID: Rep_987_c_31_15
Type: CAZyme
Location: 19860 - 22253 (+)
Type: CAZyme
Location: 19860 - 22253 (+)
Gene ID: Rep_987_c_31_16
Type: CAZyme
Location: 22263 - 24344 (+)
Type: CAZyme
Location: 22263 - 24344 (+)
Gene ID: Rep_987_c_31_17
Type: TC
Location: 24431 - 25747 (-)
Type: TC
Location: 24431 - 25747 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_31_13 | vegetarian > vegan | 1.07984 | 0.01926 |