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Cluster: Rep_987_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_987_c_21 Rep_987_c_21_46 46396 46758 - 4.A.4.1.1
TC Rep_987_c_21 Rep_987_c_21_47 46771 47730 - 4.A.4.1.1
TC Rep_987_c_21 Rep_987_c_21_48 47727 48290 - 4.A.4.1.1
CAZyme Rep_987_c_21 Rep_987_c_21_49 48541 49641 + GH103
TC Rep_987_c_21 Rep_987_c_21_50 49949 50602 + 3.A.1.15.10
TC Rep_987_c_21 Rep_987_c_21_51 50599 51459 + 3.A.1.15.10
TC Rep_987_c_21 Rep_987_c_21_52 51474 52352 + 3.A.1.15.10
Gene ID: Rep_987_c_21_46
Type: TC
Location: 46396 - 46758 (-)
Gene ID: Rep_987_c_21_47
Type: TC
Location: 46771 - 47730 (-)
Gene ID: Rep_987_c_21_48
Type: TC
Location: 47727 - 48290 (-)
Gene ID: Rep_987_c_21_49
Type: CAZyme
Location: 48541 - 49641 (+)
Gene ID: Rep_987_c_21_50
Type: TC
Location: 49949 - 50602 (+)
Gene ID: Rep_987_c_21_51
Type: TC
Location: 50599 - 51459 (+)
Gene ID: Rep_987_c_21_52
Type: TC
Location: 51474 - 52352 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_21_46 vegetarian > omnivore 1.96272 0.03112
Rep_987_c_21_46 vegetarian > vegan 1.20976 0.01926
Rep_987_c_21_50 vegetarian > vegan 1.00365 0.01926
Rep_987_c_21_52 vegetarian > omnivore 1.67631 0.03383
Rep_987_c_21_52 vegetarian > vegan 1.09499 0.01926

🧭 Explore Read Mapping of CGC

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