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Cluster: Rep_987_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_987_c_21 Rep_987_c_21_22 19851 20459 + 3.D.1.9.2
TC Rep_987_c_21 Rep_987_c_21_23 20456 22270 + 3.D.1.9.2
TC Rep_987_c_21 Rep_987_c_21_24 22272 23195 + 3.D.1.9.2
TC Rep_987_c_21 Rep_987_c_21_25 23211 24920 + 3.D.1.9.2
TC Rep_987_c_21 Rep_987_c_21_26 24930 25472 + 3.D.1.9.2
TC Rep_987_c_21 Rep_987_c_21_27 25472 26239 + 3.D.1.9.2
pfam Rep_987_c_21 Rep_987_c_21_28 26236 26646 + HycH
peptidase Rep_987_c_21 Rep_987_c_21_29 26639 27124 + A31.003
CAZyme Rep_987_c_21 Rep_987_c_21_30 27179 28603 - GH1
TC Rep_987_c_21 Rep_987_c_21_31 28622 30073 - 4.A.1.2.3
TF Rep_987_c_21 Rep_987_c_21_32 30288 31301 + LacI
TC Rep_987_c_21 Rep_987_c_21_33 31436 31981 + 5.A.3.11.1
pfam Rep_987_c_21 Rep_987_c_21_34 31988 34204 + Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC Rep_987_c_21 Rep_987_c_21_35 34206 35228 + 2.A.52.1.1
STP Rep_987_c_21 Rep_987_c_21_36 35201 36865 - SBP_bac_5
TC Rep_987_c_21 Rep_987_c_21_37 36997 38388 - 4.A.1.1.2
Gene ID: Rep_987_c_21_22
Type: TC
Location: 19851 - 20459 (+)
Gene ID: Rep_987_c_21_23
Type: TC
Location: 20456 - 22270 (+)
Gene ID: Rep_987_c_21_24
Type: TC
Location: 22272 - 23195 (+)
Gene ID: Rep_987_c_21_25
Type: TC
Location: 23211 - 24920 (+)
Gene ID: Rep_987_c_21_26
Type: TC
Location: 24930 - 25472 (+)
Gene ID: Rep_987_c_21_27
Type: TC
Location: 25472 - 26239 (+)
Gene ID: Rep_987_c_21_28
Type: pfam
Location: 26236 - 26646 (+)
Gene ID: Rep_987_c_21_29
Type: peptidase
Location: 26639 - 27124 (+)
Gene ID: Rep_987_c_21_30
Type: CAZyme
Location: 27179 - 28603 (-)
Gene ID: Rep_987_c_21_31
Type: TC
Location: 28622 - 30073 (-)
Gene ID: Rep_987_c_21_32
Type: TF
Location: 30288 - 31301 (+)
Gene ID: Rep_987_c_21_33
Type: TC
Location: 31436 - 31981 (+)
Gene ID: Rep_987_c_21_34
Type: pfam
Location: 31988 - 34204 (+)
Gene ID: Rep_987_c_21_35
Type: TC
Location: 34206 - 35228 (+)
Gene ID: Rep_987_c_21_36
Type: STP
Location: 35201 - 36865 (-)
Gene ID: Rep_987_c_21_37
Type: TC
Location: 36997 - 38388 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_21_29 vegetarian > vegan 1.36808 0.01386
Rep_987_c_21_32 vegetarian > omnivore 1.22621 0.03758
Rep_987_c_21_35 vegetarian > omnivore 1.26862 0.03758

🧭 Explore Read Mapping of CGC

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