Cluster: Rep_987_CGC53
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_987
- CGC Family ID: CGCFAM_00236
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_987_c_19 | Rep_987_c_19_59 | 39693 | 40709 | + | 3.A.1.10.1 |
| TC | Rep_987_c_19 | Rep_987_c_19_60 | 40734 | 42308 | + | 3.A.1.10.1 |
| TC | Rep_987_c_19 | Rep_987_c_19_61 | 42310 | 43341 | + | 3.A.1.10.5 |
| pfam | Rep_987_c_19 | Rep_987_c_19_62 | 43492 | 43767 | + | YdgH_BhsA-like |
| TC | Rep_987_c_19 | Rep_987_c_19_63 | 43952 | 46138 | + | 1.B.14.1.15 |
| pfam | Rep_987_c_19 | Rep_987_c_19_64 | 46266 | 48239 | + | PhoX |
| TC | Rep_987_c_19 | Rep_987_c_19_65 | 48342 | 49730 | + | 2.A.3.1.1 |
| TC | Rep_987_c_19 | Rep_987_c_19_66 | 49960 | 51198 | + | 2.A.1.10.4 |
| pfam | Rep_987_c_19 | Rep_987_c_19_67 | 51214 | 52239 | + | AP_endonuc_2 |
| CAZyme | Rep_987_c_19 | Rep_987_c_19_68 | 52232 | 53374 | + | GH109 |
| TF | Rep_987_c_19 | Rep_987_c_19_69 | 53450 | 54421 | + | LacI |
| TC | Rep_987_c_19 | Rep_987_c_19_70 | 54422 | 55666 | - | 1.A.23.4.5 |
| TC | Rep_987_c_19 | Rep_987_c_19_71 | 55731 | 57167 | - | 2.A.1.3.38 |
Gene ID: Rep_987_c_19_59
Type: TC
Location: 39693 - 40709 (+)
Type: TC
Location: 39693 - 40709 (+)
Gene ID: Rep_987_c_19_60
Type: TC
Location: 40734 - 42308 (+)
Type: TC
Location: 40734 - 42308 (+)
Gene ID: Rep_987_c_19_61
Type: TC
Location: 42310 - 43341 (+)
Type: TC
Location: 42310 - 43341 (+)
Gene ID: Rep_987_c_19_62
Type: pfam
Location: 43492 - 43767 (+)
Type: pfam
Location: 43492 - 43767 (+)
Gene ID: Rep_987_c_19_63
Type: TC
Location: 43952 - 46138 (+)
Type: TC
Location: 43952 - 46138 (+)
Gene ID: Rep_987_c_19_64
Type: pfam
Location: 46266 - 48239 (+)
Type: pfam
Location: 46266 - 48239 (+)
Gene ID: Rep_987_c_19_65
Type: TC
Location: 48342 - 49730 (+)
Type: TC
Location: 48342 - 49730 (+)
Gene ID: Rep_987_c_19_66
Type: TC
Location: 49960 - 51198 (+)
Type: TC
Location: 49960 - 51198 (+)
Gene ID: Rep_987_c_19_67
Type: pfam
Location: 51214 - 52239 (+)
Type: pfam
Location: 51214 - 52239 (+)
Gene ID: Rep_987_c_19_68
Type: CAZyme
Location: 52232 - 53374 (+)
Type: CAZyme
Location: 52232 - 53374 (+)
Gene ID: Rep_987_c_19_69
Type: TF
Location: 53450 - 54421 (+)
Type: TF
Location: 53450 - 54421 (+)
Gene ID: Rep_987_c_19_70
Type: TC
Location: 54422 - 55666 (-)
Type: TC
Location: 54422 - 55666 (-)
Gene ID: Rep_987_c_19_71
Type: TC
Location: 55731 - 57167 (-)
Type: TC
Location: 55731 - 57167 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_19_63 | vegetarian > omnivore | 2.06752 | 0.02434 |
| Rep_987_c_19_64 | vegetarian > omnivore | 1.62887 | 0.03758 |
| Rep_987_c_19_64 | vegetarian > vegan | 1.69058 | 0.01926 |
| Rep_987_c_19_66 | vegetarian > omnivore | 1.38404 | 0.03758 |
| Rep_987_c_19_68 | vegetarian > omnivore | 1.43209 | 0.03758 |
| Rep_987_c_19_68 | vegetarian > vegan | 1.24652 | 0.01926 |
| Rep_987_c_19_69 | vegetarian > omnivore | 1.24162 | 0.03758 |
| Rep_987_c_19_71 | vegetarian > omnivore | 2.66735 | 0.03758 |