Cluster: Rep_987_CGC50
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_987
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_987_c_15 | Rep_987_c_15_47 | 52228 | 53493 | - | 2.A.1.5.4 |
| CAZyme | Rep_987_c_15 | Rep_987_c_15_48 | 53538 | 55661 | - | GH36 |
| TF | Rep_987_c_15 | Rep_987_c_15_49 | 55766 | 56761 | - | LacI |
| TF | Rep_987_c_15 | Rep_987_c_15_50 | 56779 | 57327 | - | HTH_3 |
| TC | Rep_987_c_15 | Rep_987_c_15_51 | 57430 | 58089 | + | 2.A.78.2.3 |
| TC | Rep_987_c_15 | Rep_987_c_15_52 | 58089 | 58412 | + | 2.A.78.2.3 |
| NULL(UNKNOWN) | Rep_987_c_15 | Rep_987_c_15_53 | 58454 | 59041 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_987_c_15 | Rep_987_c_15_54 | 59032 | 61458 | - | 1.B.11.5.1 |
Gene ID: Rep_987_c_15_47
Type: TC
Location: 52228 - 53493 (-)
Type: TC
Location: 52228 - 53493 (-)
Gene ID: Rep_987_c_15_48
Type: CAZyme
Location: 53538 - 55661 (-)
Type: CAZyme
Location: 53538 - 55661 (-)
Gene ID: Rep_987_c_15_49
Type: TF
Location: 55766 - 56761 (-)
Type: TF
Location: 55766 - 56761 (-)
Gene ID: Rep_987_c_15_50
Type: TF
Location: 56779 - 57327 (-)
Type: TF
Location: 56779 - 57327 (-)
Gene ID: Rep_987_c_15_51
Type: TC
Location: 57430 - 58089 (+)
Type: TC
Location: 57430 - 58089 (+)
Gene ID: Rep_987_c_15_52
Type: TC
Location: 58089 - 58412 (+)
Type: TC
Location: 58089 - 58412 (+)
Gene ID: Rep_987_c_15_53
Type:
Location: 58454 - 59041 (-)
Type:
Location: 58454 - 59041 (-)
Gene ID: Rep_987_c_15_54
Type: TC
Location: 59032 - 61458 (-)
Type: TC
Location: 59032 - 61458 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_15_47 | vegetarian > omnivore | 2.19640 | 0.03758 |
| Rep_987_c_15_47 | vegetarian > vegan | 1.27921 | 0.01926 |
| Rep_987_c_15_49 | vegetarian > omnivore | 1.05523 | 0.03758 |
| Rep_987_c_15_49 | vegetarian > vegan | 1.38745 | 0.01926 |
| Rep_987_c_15_50 | vegetarian > vegan | 1.01413 | 0.01926 |
| Rep_987_c_15_51 | vegetarian > vegan | 1.62320 | 0.01926 |