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Cluster: Rep_987_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_987_c_0 Rep_987_c_0_513 527448 529040 + 4.A.1.1.3
STP Rep_987_c_0 Rep_987_c_0_514 529089 530261 + Aminotran_1_2
pfam Rep_987_c_0 Rep_987_c_0_515 530358 531359 + A_deaminase
CAZyme Rep_987_c_0 Rep_987_c_0_516 531413 532453 - GH109
TF Rep_987_c_0 Rep_987_c_0_517 533055 533270 + HHA
pfam Rep_987_c_0 Rep_987_c_0_518 533357 533797 + DUF2569
TC Rep_987_c_0 Rep_987_c_0_519 533874 534455 + 3.D.6.1.4
TC Rep_987_c_0 Rep_987_c_0_520 534455 535033 + 3.D.6.1.4
TC Rep_987_c_0 Rep_987_c_0_521 535026 537047 + 3.D.6.1.4
TC Rep_987_c_0 Rep_987_c_0_522 537048 538100 + 3.D.6.1.4
TC Rep_987_c_0 Rep_987_c_0_523 538111 538731 + 3.D.6.1.4
TC Rep_987_c_0 Rep_987_c_0_524 538734 539420 + 3.D.6.1.4
STP Rep_987_c_0 Rep_987_c_0_525 539417 540052 + HhH-GPD
TC Rep_987_c_0 Rep_987_c_0_526 540644 542152 + 2.A.17.1.2
Gene ID: Rep_987_c_0_513
Type: TC
Location: 527448 - 529040 (+)
Gene ID: Rep_987_c_0_514
Type: STP
Location: 529089 - 530261 (+)
Gene ID: Rep_987_c_0_515
Type: pfam
Location: 530358 - 531359 (+)
Gene ID: Rep_987_c_0_516
Type: CAZyme
Location: 531413 - 532453 (-)
Gene ID: Rep_987_c_0_517
Type: TF
Location: 533055 - 533270 (+)
Gene ID: Rep_987_c_0_518
Type: pfam
Location: 533357 - 533797 (+)
Gene ID: Rep_987_c_0_519
Type: TC
Location: 533874 - 534455 (+)
Gene ID: Rep_987_c_0_520
Type: TC
Location: 534455 - 535033 (+)
Gene ID: Rep_987_c_0_521
Type: TC
Location: 535026 - 537047 (+)
Gene ID: Rep_987_c_0_522
Type: TC
Location: 537048 - 538100 (+)
Gene ID: Rep_987_c_0_523
Type: TC
Location: 538111 - 538731 (+)
Gene ID: Rep_987_c_0_524
Type: TC
Location: 538734 - 539420 (+)
Gene ID: Rep_987_c_0_525
Type: STP
Location: 539417 - 540052 (+)
Gene ID: Rep_987_c_0_526
Type: TC
Location: 540644 - 542152 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_0_517 vegetarian > vegan 2.99878 0.01926
Rep_987_c_0_523 vegetarian > vegan 1.11266 0.01926
Rep_987_c_0_525 vegetarian > omnivore 2.63507 0.02105

🧭 Explore Read Mapping of CGC

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