Cluster: Rep_987_CGC49
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_987
- CGC Family ID: CGCFAM_00426
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_987_c_14 | Rep_987_c_14_7 | 8029 | 9330 | + | 2.A.1.14.2 |
| CAZyme | Rep_987_c_14 | Rep_987_c_14_8 | 9348 | 11711 | + | GH31_2 |
| TC | Rep_987_c_14 | Rep_987_c_14_9 | 11790 | 13385 | - | 3.A.1.121.4 |
| peptidase | Rep_987_c_14 | Rep_987_c_14_10 | 13541 | 14527 | + | C82.UPB |
| TF | Rep_987_c_14 | Rep_987_c_14_11 | 14568 | 15284 | - | GntR |
| TC | Rep_987_c_14 | Rep_987_c_14_12 | 15296 | 16621 | - | 4.A.3.2.9 |
| CAZyme | Rep_987_c_14 | Rep_987_c_14_13 | 16673 | 18049 | - | GH1 |
| TC | Rep_987_c_14 | Rep_987_c_14_14 | 18197 | 19237 | - | 8.A.5.1.3 |
| TC | Rep_987_c_14 | Rep_987_c_14_15 | 19342 | 20865 | - | 1.B.17.3.8 |
| TC | Rep_987_c_14 | Rep_987_c_14_16 | 20865 | 22436 | - | 2.A.1.3.2 |
| TC | Rep_987_c_14 | Rep_987_c_14_17 | 22433 | 23527 | - | 8.A.1.1.1 |
| TC | Rep_987_c_14 | Rep_987_c_14_18 | 23629 | 24738 | - | 2.A.45.2.5 |
Gene ID: Rep_987_c_14_7
Type: TC
Location: 8029 - 9330 (+)
Type: TC
Location: 8029 - 9330 (+)
Gene ID: Rep_987_c_14_8
Type: CAZyme
Location: 9348 - 11711 (+)
Type: CAZyme
Location: 9348 - 11711 (+)
Gene ID: Rep_987_c_14_9
Type: TC
Location: 11790 - 13385 (-)
Type: TC
Location: 11790 - 13385 (-)
Gene ID: Rep_987_c_14_10
Type: peptidase
Location: 13541 - 14527 (+)
Type: peptidase
Location: 13541 - 14527 (+)
Gene ID: Rep_987_c_14_11
Type: TF
Location: 14568 - 15284 (-)
Type: TF
Location: 14568 - 15284 (-)
Gene ID: Rep_987_c_14_12
Type: TC
Location: 15296 - 16621 (-)
Type: TC
Location: 15296 - 16621 (-)
Gene ID: Rep_987_c_14_13
Type: CAZyme
Location: 16673 - 18049 (-)
Type: CAZyme
Location: 16673 - 18049 (-)
Gene ID: Rep_987_c_14_14
Type: TC
Location: 18197 - 19237 (-)
Type: TC
Location: 18197 - 19237 (-)
Gene ID: Rep_987_c_14_15
Type: TC
Location: 19342 - 20865 (-)
Type: TC
Location: 19342 - 20865 (-)
Gene ID: Rep_987_c_14_16
Type: TC
Location: 20865 - 22436 (-)
Type: TC
Location: 20865 - 22436 (-)
Gene ID: Rep_987_c_14_17
Type: TC
Location: 22433 - 23527 (-)
Type: TC
Location: 22433 - 23527 (-)
Gene ID: Rep_987_c_14_18
Type: TC
Location: 23629 - 24738 (-)
Type: TC
Location: 23629 - 24738 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_14_7 | vegetarian > omnivore | 1.11087 | 0.03758 |
| Rep_987_c_14_11 | vegetarian > omnivore | 1.14613 | 0.03758 |
| Rep_987_c_14_12 | vegetarian > omnivore | 1.39298 | 0.03758 |
| Rep_987_c_14_12 | vegetarian > vegan | 1.32903 | 0.01926 |
| Rep_987_c_14_14 | vegetarian > omnivore | 2.01872 | 0.03758 |
| Rep_987_c_14_14 | vegetarian > vegan | 1.03808 | 0.01926 |
| Rep_987_c_14_15 | vegetarian > omnivore | 1.02638 | 0.03758 |
| Rep_987_c_14_18 | vegetarian > vegan | 1.29648 | 0.01926 |