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Cluster: Rep_987_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_987_c_10 Rep_987_c_10_50 53443 54858 - 2.A.1.3.26
TC Rep_987_c_10 Rep_987_c_10_51 54859 57936 - 2.A.6.2.12
TC Rep_987_c_10 Rep_987_c_10_52 57937 61059 - 2.A.6.2.12
TC Rep_987_c_10 Rep_987_c_10_53 61059 62261 - 8.A.1.6.2
pfam Rep_987_c_10 Rep_987_c_10_54 62427 63779 - HSP70 | HSP70
STP Rep_987_c_10 Rep_987_c_10_55 64035 64907 + AlkA_N | HhH-GPD
TC Rep_987_c_10 Rep_987_c_10_56 64872 68201 - 9.B.34.1.1
pfam Rep_987_c_10 Rep_987_c_10_57 68545 69186 + PRK
pfam Rep_987_c_10 Rep_987_c_10_58 69278 69859 + DCD_N | DCD
TC Rep_987_c_10 Rep_987_c_10_59 69882 71732 + 9.B.22.2.1
TC Rep_987_c_10 Rep_987_c_10_60 71821 73404 - 2.A.109.2.3
TC Rep_987_c_10 Rep_987_c_10_61 74097 75236 + 1.B.18.3.1
pfam Rep_987_c_10 Rep_987_c_10_62 75243 75686 + LMWPc
TC Rep_987_c_10 Rep_987_c_10_63 75689 77851 + 8.A.3.3.2
CAZyme Rep_987_c_10 Rep_987_c_10_64 77919 78761 + GT2
pfam Rep_987_c_10 Rep_987_c_10_65 78761 79252 + Hexapep
CAZyme Rep_987_c_10 Rep_987_c_10_66 79249 80466 + GT4
NULL(UNKNOWN) Rep_987_c_10 Rep_987_c_10_67 80441 81661 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_987_c_10 Rep_987_c_10_68 81674 82420 + GT2
Gene ID: Rep_987_c_10_50
Type: TC
Location: 53443 - 54858 (-)
Gene ID: Rep_987_c_10_51
Type: TC
Location: 54859 - 57936 (-)
Gene ID: Rep_987_c_10_52
Type: TC
Location: 57937 - 61059 (-)
Gene ID: Rep_987_c_10_53
Type: TC
Location: 61059 - 62261 (-)
Gene ID: Rep_987_c_10_54
Type: pfam
Location: 62427 - 63779 (-)
Gene ID: Rep_987_c_10_55
Type: STP
Location: 64035 - 64907 (+)
Gene ID: Rep_987_c_10_56
Type: TC
Location: 64872 - 68201 (-)
Gene ID: Rep_987_c_10_57
Type: pfam
Location: 68545 - 69186 (+)
Gene ID: Rep_987_c_10_58
Type: pfam
Location: 69278 - 69859 (+)
Gene ID: Rep_987_c_10_59
Type: TC
Location: 69882 - 71732 (+)
Gene ID: Rep_987_c_10_60
Type: TC
Location: 71821 - 73404 (-)
Gene ID: Rep_987_c_10_61
Type: TC
Location: 74097 - 75236 (+)
Gene ID: Rep_987_c_10_62
Type: pfam
Location: 75243 - 75686 (+)
Gene ID: Rep_987_c_10_63
Type: TC
Location: 75689 - 77851 (+)
Gene ID: Rep_987_c_10_64
Type: CAZyme
Location: 77919 - 78761 (+)
Gene ID: Rep_987_c_10_65
Type: pfam
Location: 78761 - 79252 (+)
Gene ID: Rep_987_c_10_66
Type: CAZyme
Location: 79249 - 80466 (+)
Gene ID: Rep_987_c_10_67
Type:
Location: 80441 - 81661 (+)
Gene ID: Rep_987_c_10_68
Type: CAZyme
Location: 81674 - 82420 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_10_55 vegetarian > omnivore 2.80158 0.03758
Rep_987_c_10_68 vegan > omnivore 2.44838 0.04210
Rep_987_c_10_68 vegetarian > omnivore 2.70910 0.03758

🧭 Explore Read Mapping of CGC

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