Cluster: Rep_987_CGC40
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_987
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_987_c_10 | Rep_987_c_10_7 | 5171 | 7468 | + | GH3 |
| TC | Rep_987_c_10 | Rep_987_c_10_8 | 7615 | 8532 | + | 3.A.1.12.15 |
| TC | Rep_987_c_10 | Rep_987_c_10_9 | 8545 | 9702 | + | 3.A.1.12.15 |
| TC | Rep_987_c_10 | Rep_987_c_10_10 | 9695 | 10645 | + | 3.A.1.12.15 |
| TC | Rep_987_c_10 | Rep_987_c_10_11 | 10629 | 11366 | + | 3.A.1.12.15 |
| NULL(UNKNOWN) | Rep_987_c_10 | Rep_987_c_10_12 | 11341 | 11454 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_987_c_10 | Rep_987_c_10_13 | 11524 | 12264 | - | MerR |
| TC | Rep_987_c_10 | Rep_987_c_10_14 | 12482 | 14167 | + | 9.B.33.1.1 |
Gene ID: Rep_987_c_10_7
Type: CAZyme
Location: 5171 - 7468 (+)
Type: CAZyme
Location: 5171 - 7468 (+)
Gene ID: Rep_987_c_10_8
Type: TC
Location: 7615 - 8532 (+)
Type: TC
Location: 7615 - 8532 (+)
Gene ID: Rep_987_c_10_9
Type: TC
Location: 8545 - 9702 (+)
Type: TC
Location: 8545 - 9702 (+)
Gene ID: Rep_987_c_10_10
Type: TC
Location: 9695 - 10645 (+)
Type: TC
Location: 9695 - 10645 (+)
Gene ID: Rep_987_c_10_11
Type: TC
Location: 10629 - 11366 (+)
Type: TC
Location: 10629 - 11366 (+)
Gene ID: Rep_987_c_10_12
Type:
Location: 11341 - 11454 (-)
Type:
Location: 11341 - 11454 (-)
Gene ID: Rep_987_c_10_13
Type: TF
Location: 11524 - 12264 (-)
Type: TF
Location: 11524 - 12264 (-)
Gene ID: Rep_987_c_10_14
Type: TC
Location: 12482 - 14167 (+)
Type: TC
Location: 12482 - 14167 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_10_10 | vegetarian > vegan | 1.84563 | 0.01926 |
| Rep_987_c_10_11 | vegetarian > vegan | 2.56037 | 0.01926 |
| Rep_987_c_10_12 | vegetarian > omnivore | 2.43416 | 0.03758 |
| Rep_987_c_10_12 | vegetarian > vegan | 1.46190 | 0.01926 |
| Rep_987_c_10_13 | vegetarian > omnivore | 1.13306 | 0.03758 |
| Rep_987_c_10_13 | vegetarian > vegan | 1.62534 | 0.01926 |