Cluster: Rep_987_CGC36
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_987
- CGC Family ID: CGCFAM_00796
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_987_c_9 | Rep_987_c_9_36 | 31880 | 33199 | + | 2.A.1.4.4 |
| TC | Rep_987_c_9 | Rep_987_c_9_37 | 33340 | 34731 | + | 2.A.1.4.1 |
| pfam | Rep_987_c_9 | Rep_987_c_9_38 | 34908 | 35360 | + | DUF1198 |
| TC | Rep_987_c_9 | Rep_987_c_9_39 | 35463 | 36653 | + | 2.A.1.2.26 |
| pfam | Rep_987_c_9 | Rep_987_c_9_40 | 36710 | 36985 | + | PhdYeFM_antitox |
| pfam | Rep_987_c_9 | Rep_987_c_9_41 | 36957 | 37223 | + | YoeB_toxin |
| TC | Rep_987_c_9 | Rep_987_c_9_42 | 37225 | 38130 | - | 2.A.7.3.12 |
| pfam | Rep_987_c_9 | Rep_987_c_9_43 | 38279 | 39658 | - | LamB |
| TC | Rep_987_c_9 | Rep_987_c_9_44 | 39796 | 40098 | - | 4.A.3.2.1 |
| CAZyme | Rep_987_c_9 | Rep_987_c_9_45 | 40110 | 41483 | - | GH1 |
| TC | Rep_987_c_9 | Rep_987_c_9_46 | 41501 | 42826 | - | 4.A.3.2.6 |
| TC | Rep_987_c_9 | Rep_987_c_9_47 | 42838 | 43152 | - | 4.A.3.2.6 |
Gene ID: Rep_987_c_9_36
Type: TC
Location: 31880 - 33199 (+)
Type: TC
Location: 31880 - 33199 (+)
Gene ID: Rep_987_c_9_37
Type: TC
Location: 33340 - 34731 (+)
Type: TC
Location: 33340 - 34731 (+)
Gene ID: Rep_987_c_9_38
Type: pfam
Location: 34908 - 35360 (+)
Type: pfam
Location: 34908 - 35360 (+)
Gene ID: Rep_987_c_9_39
Type: TC
Location: 35463 - 36653 (+)
Type: TC
Location: 35463 - 36653 (+)
Gene ID: Rep_987_c_9_40
Type: pfam
Location: 36710 - 36985 (+)
Type: pfam
Location: 36710 - 36985 (+)
Gene ID: Rep_987_c_9_41
Type: pfam
Location: 36957 - 37223 (+)
Type: pfam
Location: 36957 - 37223 (+)
Gene ID: Rep_987_c_9_42
Type: TC
Location: 37225 - 38130 (-)
Type: TC
Location: 37225 - 38130 (-)
Gene ID: Rep_987_c_9_43
Type: pfam
Location: 38279 - 39658 (-)
Type: pfam
Location: 38279 - 39658 (-)
Gene ID: Rep_987_c_9_44
Type: TC
Location: 39796 - 40098 (-)
Type: TC
Location: 39796 - 40098 (-)
Gene ID: Rep_987_c_9_45
Type: CAZyme
Location: 40110 - 41483 (-)
Type: CAZyme
Location: 40110 - 41483 (-)
Gene ID: Rep_987_c_9_46
Type: TC
Location: 41501 - 42826 (-)
Type: TC
Location: 41501 - 42826 (-)
Gene ID: Rep_987_c_9_47
Type: TC
Location: 42838 - 43152 (-)
Type: TC
Location: 42838 - 43152 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_9_38 | vegetarian > omnivore | 1.40619 | 0.03758 |
| Rep_987_c_9_38 | vegetarian > vegan | 1.40217 | 0.01926 |
| Rep_987_c_9_42 | vegetarian > omnivore | 1.10710 | 0.03758 |
| Rep_987_c_9_43 | vegetarian > vegan | 1.61887 | 0.01926 |
| Rep_987_c_9_44 | vegetarian > omnivore | 2.31736 | 0.03758 |
| Rep_987_c_9_45 | vegetarian > omnivore | 1.18884 | 0.03112 |
| Rep_987_c_9_46 | vegetarian > omnivore | 1.39841 | 0.03758 |
| Rep_987_c_9_47 | vegetarian > omnivore | 1.68782 | 0.03758 |
| Rep_987_c_9_47 | vegetarian > vegan | 1.09752 | 0.01926 |