dbCAN HGM

Cluster: Rep_987_CGC35

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_987_c_9	Rep_987_c_9_14	11327	12988	+	2.A.81.1.5
TF	Rep_987_c_9	Rep_987_c_9_15	12956	13702	-	GntR
TC	Rep_987_c_9	Rep_987_c_9_16	13925	15547	+	4.A.1.1.10
CAZyme	Rep_987_c_9	Rep_987_c_9_17	15544	16866	+	GH4
TC	Rep_987_c_9	Rep_987_c_9_18	16959	17306	+	9.B.51.1.1
pfam	Rep_987_c_9	Rep_987_c_9_19	17296	17643	+	DUF202
STP	Rep_987_c_9	Rep_987_c_9_20	17676	18962	-	PALP
TC	Rep_987_c_9	Rep_987_c_9_21	18980	20317	-	2.A.8.1.5
TF	Rep_987_c_9	Rep_987_c_9_22	20522	21448	+	HTH_1
CAZyme	Rep_987_c_9	Rep_987_c_9_23	21533	22621	+	GH5_25
TC	Rep_987_c_9	Rep_987_c_9_24	22524	23681	-	2.A.1.2.9
TC	Rep_987_c_9	Rep_987_c_9_25	23884	24717	-	2.A.7.31.3

Gene ID: Rep_987_c_9_14
Type: TC
Location: 11327 - 12988 (+)

Gene ID: Rep_987_c_9_15
Type: TF
Location: 12956 - 13702 (-)

Gene ID: Rep_987_c_9_16
Type: TC
Location: 13925 - 15547 (+)

Gene ID: Rep_987_c_9_17
Type: CAZyme
Location: 15544 - 16866 (+)

Gene ID: Rep_987_c_9_18
Type: TC
Location: 16959 - 17306 (+)

Gene ID: Rep_987_c_9_19
Type: pfam
Location: 17296 - 17643 (+)

Gene ID: Rep_987_c_9_20
Type: STP
Location: 17676 - 18962 (-)

Gene ID: Rep_987_c_9_21
Type: TC
Location: 18980 - 20317 (-)

Gene ID: Rep_987_c_9_22
Type: TF
Location: 20522 - 21448 (+)

Gene ID: Rep_987_c_9_23
Type: CAZyme
Location: 21533 - 22621 (+)

Gene ID: Rep_987_c_9_24
Type: TC
Location: 22524 - 23681 (-)

Gene ID: Rep_987_c_9_25
Type: TC
Location: 23884 - 24717 (-)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_987_c_9_18	vegetarian > omnivore	1.22607	0.03758
Rep_987_c_9_19	vegetarian > omnivore	1.33375	0.03758
Rep_987_c_9_21	vegetarian > vegan	1.01089	0.01926
Rep_987_c_9_25	vegetarian > omnivore	1.37540	0.03586