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Cluster: Rep_987_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_987_c_8 Rep_987_c_8_90 100510 102207 + GH13_18
TC Rep_987_c_8 Rep_987_c_8_91 102223 103515 + 3.A.1.1.46
TC Rep_987_c_8 Rep_987_c_8_92 103538 104419 + 3.A.1.1.46
TC Rep_987_c_8 Rep_987_c_8_93 104406 105248 + 3.A.1.1.46
pfam Rep_987_c_8 Rep_987_c_8_94 105280 106332 + ADH_zinc_N
pfam Rep_987_c_8 Rep_987_c_8_95 106349 107137 + AP_endonuc_2
CAZyme Rep_987_c_8 Rep_987_c_8_96 107152 108207 + GH179
CAZyme Rep_987_c_8 Rep_987_c_8_97 108201 110480 + GH65
pfam Rep_987_c_8 Rep_987_c_8_98 110470 111135 + Hydrolase | HAD_2
TC Rep_987_c_8 Rep_987_c_8_99 111149 112231 + 3.A.1.1.46
TC Rep_987_c_8 Rep_987_c_8_100 112297 113211 + 1.B.21.1.1
Gene ID: Rep_987_c_8_90
Type: CAZyme
Location: 100510 - 102207 (+)
Gene ID: Rep_987_c_8_91
Type: TC
Location: 102223 - 103515 (+)
Gene ID: Rep_987_c_8_92
Type: TC
Location: 103538 - 104419 (+)
Gene ID: Rep_987_c_8_93
Type: TC
Location: 104406 - 105248 (+)
Gene ID: Rep_987_c_8_94
Type: pfam
Location: 105280 - 106332 (+)
Gene ID: Rep_987_c_8_95
Type: pfam
Location: 106349 - 107137 (+)
Gene ID: Rep_987_c_8_96
Type: CAZyme
Location: 107152 - 108207 (+)
Gene ID: Rep_987_c_8_97
Type: CAZyme
Location: 108201 - 110480 (+)
Gene ID: Rep_987_c_8_98
Type: pfam
Location: 110470 - 111135 (+)
Gene ID: Rep_987_c_8_99
Type: TC
Location: 111149 - 112231 (+)
Gene ID: Rep_987_c_8_100
Type: TC
Location: 112297 - 113211 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_8_94 vegetarian > vegan 1.02489 0.01926
Rep_987_c_8_100 vegetarian > omnivore 1.43497 0.03758

🧭 Explore Read Mapping of CGC

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