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Cluster: Rep_987_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_987_c_5 Rep_987_c_5_72 73490 73783 - 3.A.1.27.3
TC Rep_987_c_5 Rep_987_c_5_73 73783 74418 - 3.A.1.27.3
TC Rep_987_c_5 Rep_987_c_5_74 74437 74985 - 3.A.1.27.3
TC Rep_987_c_5 Rep_987_c_5_75 74990 75772 - 3.A.1.27.3
TC Rep_987_c_5 Rep_987_c_5_76 75780 76592 - 3.A.1.27.3
TC Rep_987_c_5 Rep_987_c_5_77 76820 77797 + 2.A.19.5.1
STP Rep_987_c_5 Rep_987_c_5_78 77811 78797 + CBS | CBS | SIS
pfam Rep_987_c_5 Rep_987_c_5_79 78812 79378 + Hydrolase_3
TC Rep_987_c_5 Rep_987_c_5_80 79375 79950 + 1.B.42.1.2
TC Rep_987_c_5 Rep_987_c_5_81 79919 80473 + 1.B.42.1.2
TC Rep_987_c_5 Rep_987_c_5_82 80480 81205 + 1.B.42.1.2
pfam Rep_987_c_5 Rep_987_c_5_83 81253 82686 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam Rep_987_c_5 Rep_987_c_5_84 82709 82996 + Ribosomal_S30AE
TC Rep_987_c_5 Rep_987_c_5_85 83079 83570 + 4.A.2.1.4
pfam Rep_987_c_5 Rep_987_c_5_86 83616 84470 + RapZ-like_N | PapZ_C
TC Rep_987_c_5 Rep_987_c_5_87 84467 84739 + 8.A.8.1.5
CAZyme Rep_987_c_5 Rep_987_c_5_88 84857 85504 - GT51
peptidase Rep_987_c_5 Rep_987_c_5_89 85501 86157 - C56.975
STP Rep_987_c_5 Rep_987_c_5_90 86387 88720 - HATPase_c | HisKA | PAS | Response_reg
TC Rep_987_c_5 Rep_987_c_5_91 88856 89938 - 1.B.42.1.2
TC Rep_987_c_5 Rep_987_c_5_92 89938 91038 - 1.B.42.1.2
Gene ID: Rep_987_c_5_72
Type: TC
Location: 73490 - 73783 (-)
Gene ID: Rep_987_c_5_73
Type: TC
Location: 73783 - 74418 (-)
Gene ID: Rep_987_c_5_74
Type: TC
Location: 74437 - 74985 (-)
Gene ID: Rep_987_c_5_75
Type: TC
Location: 74990 - 75772 (-)
Gene ID: Rep_987_c_5_76
Type: TC
Location: 75780 - 76592 (-)
Gene ID: Rep_987_c_5_77
Type: TC
Location: 76820 - 77797 (+)
Gene ID: Rep_987_c_5_78
Type: STP
Location: 77811 - 78797 (+)
Gene ID: Rep_987_c_5_79
Type: pfam
Location: 78812 - 79378 (+)
Gene ID: Rep_987_c_5_80
Type: TC
Location: 79375 - 79950 (+)
Gene ID: Rep_987_c_5_81
Type: TC
Location: 79919 - 80473 (+)
Gene ID: Rep_987_c_5_82
Type: TC
Location: 80480 - 81205 (+)
Gene ID: Rep_987_c_5_83
Type: pfam
Location: 81253 - 82686 (+)
Gene ID: Rep_987_c_5_84
Type: pfam
Location: 82709 - 82996 (+)
Gene ID: Rep_987_c_5_85
Type: TC
Location: 83079 - 83570 (+)
Gene ID: Rep_987_c_5_86
Type: pfam
Location: 83616 - 84470 (+)
Gene ID: Rep_987_c_5_87
Type: TC
Location: 84467 - 84739 (+)
Gene ID: Rep_987_c_5_88
Type: CAZyme
Location: 84857 - 85504 (-)
Gene ID: Rep_987_c_5_89
Type: peptidase
Location: 85501 - 86157 (-)
Gene ID: Rep_987_c_5_90
Type: STP
Location: 86387 - 88720 (-)
Gene ID: Rep_987_c_5_91
Type: TC
Location: 88856 - 89938 (-)
Gene ID: Rep_987_c_5_92
Type: TC
Location: 89938 - 91038 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_5_79 vegan > omnivore 1.30195 0.03385
Rep_987_c_5_85 vegetarian > vegan 1.02440 0.01926

🧭 Explore Read Mapping of CGC

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