Cluster: Rep_987_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_987
- CGC Family ID: CGCFAM_00294
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_987_c_3 | Rep_987_c_3_79 | 80706 | 82037 | - | GT2 |
| CAZyme | Rep_987_c_3 | Rep_987_c_3_80 | 82030 | 83979 | - | CE4 | GH153 |
| TC | Rep_987_c_3 | Rep_987_c_3_81 | 83988 | 86426 | - | 1.B.55.1.1 |
| TF | Rep_987_c_3 | Rep_987_c_3_82 | 87048 | 87626 | + | GerE |
| TC | Rep_987_c_3 | Rep_987_c_3_83 | 87689 | 90721 | - | 1.B.12.5.2 |
Gene ID: Rep_987_c_3_79
Type: CAZyme
Location: 80706 - 82037 (-)
Type: CAZyme
Location: 80706 - 82037 (-)
Gene ID: Rep_987_c_3_80
Type: CAZyme
Location: 82030 - 83979 (-)
Type: CAZyme
Location: 82030 - 83979 (-)
Gene ID: Rep_987_c_3_81
Type: TC
Location: 83988 - 86426 (-)
Type: TC
Location: 83988 - 86426 (-)
Gene ID: Rep_987_c_3_82
Type: TF
Location: 87048 - 87626 (+)
Type: TF
Location: 87048 - 87626 (+)
Gene ID: Rep_987_c_3_83
Type: TC
Location: 87689 - 90721 (-)
Type: TC
Location: 87689 - 90721 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_3_79 | vegetarian > omnivore | 2.02450 | 0.03758 |
| Rep_987_c_3_79 | vegetarian > vegan | 1.20510 | 0.01926 |
| Rep_987_c_3_80 | vegetarian > omnivore | 1.60850 | 0.03758 |
| Rep_987_c_3_81 | vegetarian > omnivore | 2.20293 | 0.03758 |
| Rep_987_c_3_82 | vegetarian > omnivore | 1.62721 | 0.03758 |