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Cluster: Rep_987_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_987_c_2 Rep_987_c_2_42 42938 43738 + 3.A.1.13.1
TC Rep_987_c_2 Rep_987_c_2_43 43760 44377 + 1.A.62.2.2
pfam Rep_987_c_2 Rep_987_c_2_44 44470 44814 - Fe-S_biosyn
TC Rep_987_c_2 Rep_987_c_2_45 44906 46306 - 2.A.49.5.5
pfam Rep_987_c_2 Rep_987_c_2_46 46484 47764 + Aminotran_3
TC Rep_987_c_2 Rep_987_c_2_47 47858 49840 - 3.A.1.14.3
TC Rep_987_c_2 Rep_987_c_2_48 49837 50727 - 3.A.1.14.3
TC Rep_987_c_2 Rep_987_c_2_49 50727 51524 - 3.A.1.14.3
TC Rep_987_c_2 Rep_987_c_2_50 51575 53824 - 1.B.14.1.2
CAZyme Rep_987_c_2 Rep_987_c_2_51 54056 56581 - GT51
Gene ID: Rep_987_c_2_42
Type: TC
Location: 42938 - 43738 (+)
Gene ID: Rep_987_c_2_43
Type: TC
Location: 43760 - 44377 (+)
Gene ID: Rep_987_c_2_44
Type: pfam
Location: 44470 - 44814 (-)
Gene ID: Rep_987_c_2_45
Type: TC
Location: 44906 - 46306 (-)
Gene ID: Rep_987_c_2_46
Type: pfam
Location: 46484 - 47764 (+)
Gene ID: Rep_987_c_2_47
Type: TC
Location: 47858 - 49840 (-)
Gene ID: Rep_987_c_2_48
Type: TC
Location: 49837 - 50727 (-)
Gene ID: Rep_987_c_2_49
Type: TC
Location: 50727 - 51524 (-)
Gene ID: Rep_987_c_2_50
Type: TC
Location: 51575 - 53824 (-)
Gene ID: Rep_987_c_2_51
Type: CAZyme
Location: 54056 - 56581 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_2_45 vegetarian > omnivore 1.05652 0.03758
Rep_987_c_2_45 vegetarian > vegan 1.46549 0.01926
Rep_987_c_2_48 vegetarian > omnivore 1.75993 0.03758

🧭 Explore Read Mapping of CGC

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