Cluster: Rep_987_CGC12
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_987
- CGC Family ID: CGCFAM_00788
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_987_c_1 | Rep_987_c_1_310 | 329856 | 331691 | - | CBM73 | GH19 |
| CAZyme | Rep_987_c_1 | Rep_987_c_1_311 | 331830 | 332282 | - | GH23 |
| CAZyme | Rep_987_c_1 | Rep_987_c_1_312 | 332421 | 335123 | - | GH18 |
| TC | Rep_987_c_1 | Rep_987_c_1_313 | 335386 | 336183 | - | 3.A.15.2.1 |
| pfam | Rep_987_c_1 | Rep_987_c_1_314 | 336180 | 336665 | - | T2SSM |
| pfam | Rep_987_c_1 | Rep_987_c_1_315 | 336662 | 337792 | - | T2SSL | GspL_C |
| TC | Rep_987_c_1 | Rep_987_c_1_316 | 337808 | 338824 | - | 3.A.15.1.1 |
| TC | Rep_987_c_1 | Rep_987_c_1_317 | 338821 | 339474 | - | 3.A.15.3.1 |
| TC | Rep_987_c_1 | Rep_987_c_1_318 | 339471 | 339845 | - | 3.A.15.1.1 |
| pfam | Rep_987_c_1 | Rep_987_c_1_319 | 339838 | 340323 | - | N_methyl | GspH |
| TC | Rep_987_c_1 | Rep_987_c_1_320 | 340323 | 340772 | - | 3.A.15.1.1 |
| TC | Rep_987_c_1 | Rep_987_c_1_321 | 340775 | 341983 | - | 3.A.15.1.1 |
| TC | Rep_987_c_1 | Rep_987_c_1_322 | 341983 | 343461 | - | 3.A.15.1.1 |
| TC | Rep_987_c_1 | Rep_987_c_1_323 | 343475 | 345403 | - | 1.B.22.1.1 |
Gene ID: Rep_987_c_1_310
Type: CAZyme
Location: 329856 - 331691 (-)
Type: CAZyme
Location: 329856 - 331691 (-)
Gene ID: Rep_987_c_1_311
Type: CAZyme
Location: 331830 - 332282 (-)
Type: CAZyme
Location: 331830 - 332282 (-)
Gene ID: Rep_987_c_1_312
Type: CAZyme
Location: 332421 - 335123 (-)
Type: CAZyme
Location: 332421 - 335123 (-)
Gene ID: Rep_987_c_1_313
Type: TC
Location: 335386 - 336183 (-)
Type: TC
Location: 335386 - 336183 (-)
Gene ID: Rep_987_c_1_314
Type: pfam
Location: 336180 - 336665 (-)
Type: pfam
Location: 336180 - 336665 (-)
Gene ID: Rep_987_c_1_315
Type: pfam
Location: 336662 - 337792 (-)
Type: pfam
Location: 336662 - 337792 (-)
Gene ID: Rep_987_c_1_316
Type: TC
Location: 337808 - 338824 (-)
Type: TC
Location: 337808 - 338824 (-)
Gene ID: Rep_987_c_1_317
Type: TC
Location: 338821 - 339474 (-)
Type: TC
Location: 338821 - 339474 (-)
Gene ID: Rep_987_c_1_318
Type: TC
Location: 339471 - 339845 (-)
Type: TC
Location: 339471 - 339845 (-)
Gene ID: Rep_987_c_1_319
Type: pfam
Location: 339838 - 340323 (-)
Type: pfam
Location: 339838 - 340323 (-)
Gene ID: Rep_987_c_1_320
Type: TC
Location: 340323 - 340772 (-)
Type: TC
Location: 340323 - 340772 (-)
Gene ID: Rep_987_c_1_321
Type: TC
Location: 340775 - 341983 (-)
Type: TC
Location: 340775 - 341983 (-)
Gene ID: Rep_987_c_1_322
Type: TC
Location: 341983 - 343461 (-)
Type: TC
Location: 341983 - 343461 (-)
Gene ID: Rep_987_c_1_323
Type: TC
Location: 343475 - 345403 (-)
Type: TC
Location: 343475 - 345403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter sichuanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_987_c_1_310 | vegetarian > omnivore | 2.07698 | 0.03758 |
| Rep_987_c_1_319 | vegetarian > omnivore | 14.94249 | 0.02105 |
| Rep_987_c_1_319 | vegetarian > vegan | 1.54060 | 0.01926 |
| Rep_987_c_1_320 | vegetarian > omnivore | 1.94301 | 0.03758 |
| Rep_987_c_1_321 | vegetarian > omnivore | 1.43549 | 0.03758 |
| Rep_987_c_1_323 | vegetarian > omnivore | 1.11543 | 0.03758 |