dbCAN Logo

Cluster: Rep_987_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_987_c_1 Rep_987_c_1_140 136345 137346 + 1.A.26.1.4
TF Rep_987_c_1 Rep_987_c_1_141 137389 138465 - LacI
TC Rep_987_c_1 Rep_987_c_1_142 138735 140000 + 1.B.3.1.1
TC Rep_987_c_1 Rep_987_c_1_143 140105 140347 - 4.A.1.1.1
CAZyme Rep_987_c_1 Rep_987_c_1_144 140491 142548 - GH42
CAZyme Rep_987_c_1 Rep_987_c_1_145 142578 143786 - GH53
TC Rep_987_c_1 Rep_987_c_1_146 143783 144634 - 3.A.1.1.2
TC Rep_987_c_1 Rep_987_c_1_147 144646 145950 - 3.A.1.1.2
TC Rep_987_c_1 Rep_987_c_1_148 146009 147223 - 3.A.1.1.2
TC Rep_987_c_1 Rep_987_c_1_149 147545 148660 + 3.A.1.1.4
peptidase Rep_987_c_1 Rep_987_c_1_150 148657 149892 - M20.UPW
pfam Rep_987_c_1 Rep_987_c_1_151 149889 151130 - Aminotran_5
TC Rep_987_c_1 Rep_987_c_1_152 151144 151881 - 3.A.1.3.21
TC Rep_987_c_1 Rep_987_c_1_153 151862 152539 - 3.A.1.3.10
TC Rep_987_c_1 Rep_987_c_1_154 152518 153183 - 3.A.1.3.6
Gene ID: Rep_987_c_1_140
Type: TC
Location: 136345 - 137346 (+)
Gene ID: Rep_987_c_1_141
Type: TF
Location: 137389 - 138465 (-)
Gene ID: Rep_987_c_1_142
Type: TC
Location: 138735 - 140000 (+)
Gene ID: Rep_987_c_1_143
Type: TC
Location: 140105 - 140347 (-)
Gene ID: Rep_987_c_1_144
Type: CAZyme
Location: 140491 - 142548 (-)
Gene ID: Rep_987_c_1_145
Type: CAZyme
Location: 142578 - 143786 (-)
Gene ID: Rep_987_c_1_146
Type: TC
Location: 143783 - 144634 (-)
Gene ID: Rep_987_c_1_147
Type: TC
Location: 144646 - 145950 (-)
Gene ID: Rep_987_c_1_148
Type: TC
Location: 146009 - 147223 (-)
Gene ID: Rep_987_c_1_149
Type: TC
Location: 147545 - 148660 (+)
Gene ID: Rep_987_c_1_150
Type: peptidase
Location: 148657 - 149892 (-)
Gene ID: Rep_987_c_1_151
Type: pfam
Location: 149889 - 151130 (-)
Gene ID: Rep_987_c_1_152
Type: TC
Location: 151144 - 151881 (-)
Gene ID: Rep_987_c_1_153
Type: TC
Location: 151862 - 152539 (-)
Gene ID: Rep_987_c_1_154
Type: TC
Location: 152518 - 153183 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_987_c_1_151 vegetarian > omnivore 1.97572 0.03758
Rep_987_c_1_151 vegetarian > vegan 4.48954 0.01926

🧭 Explore Read Mapping of CGC

← Back to Cluster List