Cluster: Rep_963_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_963
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_963_c_6 | Rep_963_c_6_10 | 6617 | 8092 | - | 2.A.21.9.1 |
| TF | Rep_963_c_6 | Rep_963_c_6_11 | 8085 | 8765 | - | Trans_reg_C |
| TC | Rep_963_c_6 | Rep_963_c_6_12 | 8955 | 10340 | + | 1.B.17.3.4 |
| TC | Rep_963_c_6 | Rep_963_c_6_13 | 10369 | 10722 | + | 2.A.6.1.4 |
| TC | Rep_963_c_6 | Rep_963_c_6_14 | 10836 | 12128 | + | 2.A.6.1.4 |
| TC | Rep_963_c_6 | Rep_963_c_6_15 | 12139 | 15285 | + | 2.A.6.1.3 |
| pfam | Rep_963_c_6 | Rep_963_c_6_16 | 15372 | 15812 | + | DUF411 |
| TC | Rep_963_c_6 | Rep_963_c_6_17 | 15940 | 18381 | + | 3.A.3.5.4 |
| pfam | Rep_963_c_6 | Rep_963_c_6_18 | 18422 | 18619 | + | DUF2933 |
| TC | Rep_963_c_6 | Rep_963_c_6_19 | 18653 | 19390 | - | 1.A.34.1.3 |
| NULL(UNKNOWN) | Rep_963_c_6 | Rep_963_c_6_20 | 19679 | 20128 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_963_c_6 | Rep_963_c_6_21 | 20362 | 22179 | + | AA1 |
| TC | Rep_963_c_6 | Rep_963_c_6_22 | 22179 | 23075 | + | 1.B.76.1.5 |
| TC | Rep_963_c_6 | Rep_963_c_6_23 | 23115 | 23495 | + | 9.B.62.1.5 |
| TC | Rep_963_c_6 | Rep_963_c_6_24 | 23500 | 24429 | + | 9.B.62.1.1 |
Gene ID: Rep_963_c_6_10
Type: TC
Location: 6617 - 8092 (-)
Type: TC
Location: 6617 - 8092 (-)
Gene ID: Rep_963_c_6_11
Type: TF
Location: 8085 - 8765 (-)
Type: TF
Location: 8085 - 8765 (-)
Gene ID: Rep_963_c_6_12
Type: TC
Location: 8955 - 10340 (+)
Type: TC
Location: 8955 - 10340 (+)
Gene ID: Rep_963_c_6_13
Type: TC
Location: 10369 - 10722 (+)
Type: TC
Location: 10369 - 10722 (+)
Gene ID: Rep_963_c_6_14
Type: TC
Location: 10836 - 12128 (+)
Type: TC
Location: 10836 - 12128 (+)
Gene ID: Rep_963_c_6_15
Type: TC
Location: 12139 - 15285 (+)
Type: TC
Location: 12139 - 15285 (+)
Gene ID: Rep_963_c_6_16
Type: pfam
Location: 15372 - 15812 (+)
Type: pfam
Location: 15372 - 15812 (+)
Gene ID: Rep_963_c_6_17
Type: TC
Location: 15940 - 18381 (+)
Type: TC
Location: 15940 - 18381 (+)
Gene ID: Rep_963_c_6_18
Type: pfam
Location: 18422 - 18619 (+)
Type: pfam
Location: 18422 - 18619 (+)
Gene ID: Rep_963_c_6_19
Type: TC
Location: 18653 - 19390 (-)
Type: TC
Location: 18653 - 19390 (-)
Gene ID: Rep_963_c_6_20
Type:
Location: 19679 - 20128 (-)
Type:
Location: 19679 - 20128 (-)
Gene ID: Rep_963_c_6_21
Type: CAZyme
Location: 20362 - 22179 (+)
Type: CAZyme
Location: 20362 - 22179 (+)
Gene ID: Rep_963_c_6_22
Type: TC
Location: 22179 - 23075 (+)
Type: TC
Location: 22179 - 23075 (+)
Gene ID: Rep_963_c_6_23
Type: TC
Location: 23115 - 23495 (+)
Type: TC
Location: 23115 - 23495 (+)
Gene ID: Rep_963_c_6_24
Type: TC
Location: 23500 - 24429 (+)
Type: TC
Location: 23500 - 24429 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter werkmanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.