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Cluster: Rep_963_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_963_c_83 Rep_963_c_83_172 189353 190639 - 2.A.56.1.5
pfam Rep_963_c_83 Rep_963_c_83_173 190670 191179 - DctQ
TC Rep_963_c_83 Rep_963_c_83_174 191242 192219 - 2.A.56.1.7
TC Rep_963_c_83 Rep_963_c_83_175 192595 195303 - 3.A.3.4.1
TF Rep_963_c_83 Rep_963_c_83_176 195692 196639 + LacI
TC Rep_963_c_83 Rep_963_c_83_177 196796 198214 + 4.A.1.2.4
CAZyme Rep_963_c_83 Rep_963_c_83_178 198264 199916 + GH13_29
Gene ID: Rep_963_c_83_172
Type: TC
Location: 189353 - 190639 (-)
Gene ID: Rep_963_c_83_173
Type: pfam
Location: 190670 - 191179 (-)
Gene ID: Rep_963_c_83_174
Type: TC
Location: 191242 - 192219 (-)
Gene ID: Rep_963_c_83_175
Type: TC
Location: 192595 - 195303 (-)
Gene ID: Rep_963_c_83_176
Type: TF
Location: 195692 - 196639 (+)
Gene ID: Rep_963_c_83_177
Type: TC
Location: 196796 - 198214 (+)
Gene ID: Rep_963_c_83_178
Type: CAZyme
Location: 198264 - 199916 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_963_c_83_178 vegetarian > omnivore 1.02634 0.04413

🧭 Explore Read Mapping of CGC

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