Cluster: Rep_963_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_963
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_963_c_4 | Rep_963_c_4_8 | 5719 | 7647 | + | 9.B.34.1.2 |
| CAZyme | Rep_963_c_4 | Rep_963_c_4_9 | 7736 | 8938 | - | GH88 |
| TC | Rep_963_c_4 | Rep_963_c_4_10 | 8956 | 10233 | - | 2.A.1.5.2 |
| TF | Rep_963_c_4 | Rep_963_c_4_11 | 10519 | 11382 | + | HTH_AraC | HTH_AraC |
| TC | Rep_963_c_4 | Rep_963_c_4_12 | 11544 | 12653 | + | 2.A.86.2.2 |
| TC | Rep_963_c_4 | Rep_963_c_4_13 | 12772 | 14556 | + | 9.B.34.1.3 |
Gene ID: Rep_963_c_4_8
Type: TC
Location: 5719 - 7647 (+)
Type: TC
Location: 5719 - 7647 (+)
Gene ID: Rep_963_c_4_9
Type: CAZyme
Location: 7736 - 8938 (-)
Type: CAZyme
Location: 7736 - 8938 (-)
Gene ID: Rep_963_c_4_10
Type: TC
Location: 8956 - 10233 (-)
Type: TC
Location: 8956 - 10233 (-)
Gene ID: Rep_963_c_4_11
Type: TF
Location: 10519 - 11382 (+)
Type: TF
Location: 10519 - 11382 (+)
Gene ID: Rep_963_c_4_12
Type: TC
Location: 11544 - 12653 (+)
Type: TC
Location: 11544 - 12653 (+)
Gene ID: Rep_963_c_4_13
Type: TC
Location: 12772 - 14556 (+)
Type: TC
Location: 12772 - 14556 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter werkmanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.