Cluster: Rep_963_CGC48
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_963
- CGC Family ID: CGCFAM_00123
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_963_c_67 | Rep_963_c_67_190 | 205911 | 207176 | + | 2.A.8.1.8 |
| sulfatase | Rep_963_c_67 | Rep_963_c_67_191 | 207318 | 209417 | + | S1_27 |
| pfam | Rep_963_c_67 | Rep_963_c_67_192 | 209414 | 210619 | + | DNA_processg_A | LDcluster4 |
| TC | Rep_963_c_67 | Rep_963_c_67_193 | 210658 | 211251 | - | 2.A.95.1.5 |
| pfam | Rep_963_c_67 | Rep_963_c_67_194 | 211443 | 212549 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | Rep_963_c_67 | Rep_963_c_67_195 | 212823 | 215009 | + | CBM48 | GH13_9 |
| CAZyme | Rep_963_c_67 | Rep_963_c_67_196 | 215006 | 216982 | + | CBM48 | GH13_11 |
| pfam | Rep_963_c_67 | Rep_963_c_67_197 | 216997 | 218292 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | Rep_963_c_67 | Rep_963_c_67_198 | 218292 | 219725 | + | GT5 |
| CAZyme | Rep_963_c_67 | Rep_963_c_67_199 | 219745 | 222192 | + | GT35 |
| pfam | Rep_963_c_67 | Rep_963_c_67_200 | 222282 | 223790 | - | DAO | DAO_C |
| STP | Rep_963_c_67 | Rep_963_c_67_201 | 223993 | 224319 | + | Rhodanese |
| TC | Rep_963_c_67 | Rep_963_c_67_202 | 224395 | 225225 | + | 9.B.104.1.1 |
| TF | Rep_963_c_67 | Rep_963_c_67_203 | 225321 | 226079 | + | HTH_DeoR |
| TF | Rep_963_c_67 | Rep_963_c_67_204 | 226121 | 228826 | - | GerE |
| CAZyme | Rep_963_c_67 | Rep_963_c_67_205 | 229457 | 231850 | + | GT35 |
| CAZyme | Rep_963_c_67 | Rep_963_c_67_206 | 231860 | 233947 | + | GH77 |
| TC | Rep_963_c_67 | Rep_963_c_67_207 | 234044 | 235360 | - | 2.A.8.1.4 |
Gene ID: Rep_963_c_67_190
Type: TC
Location: 205911 - 207176 (+)
Type: TC
Location: 205911 - 207176 (+)
Gene ID: Rep_963_c_67_191
Type: sulfatase
Location: 207318 - 209417 (+)
Type: sulfatase
Location: 207318 - 209417 (+)
Gene ID: Rep_963_c_67_192
Type: pfam
Location: 209414 - 210619 (+)
Type: pfam
Location: 209414 - 210619 (+)
Gene ID: Rep_963_c_67_193
Type: TC
Location: 210658 - 211251 (-)
Type: TC
Location: 210658 - 211251 (-)
Gene ID: Rep_963_c_67_194
Type: pfam
Location: 211443 - 212549 (+)
Type: pfam
Location: 211443 - 212549 (+)
Gene ID: Rep_963_c_67_195
Type: CAZyme
Location: 212823 - 215009 (+)
Type: CAZyme
Location: 212823 - 215009 (+)
Gene ID: Rep_963_c_67_196
Type: CAZyme
Location: 215006 - 216982 (+)
Type: CAZyme
Location: 215006 - 216982 (+)
Gene ID: Rep_963_c_67_197
Type: pfam
Location: 216997 - 218292 (+)
Type: pfam
Location: 216997 - 218292 (+)
Gene ID: Rep_963_c_67_198
Type: CAZyme
Location: 218292 - 219725 (+)
Type: CAZyme
Location: 218292 - 219725 (+)
Gene ID: Rep_963_c_67_199
Type: CAZyme
Location: 219745 - 222192 (+)
Type: CAZyme
Location: 219745 - 222192 (+)
Gene ID: Rep_963_c_67_200
Type: pfam
Location: 222282 - 223790 (-)
Type: pfam
Location: 222282 - 223790 (-)
Gene ID: Rep_963_c_67_201
Type: STP
Location: 223993 - 224319 (+)
Type: STP
Location: 223993 - 224319 (+)
Gene ID: Rep_963_c_67_202
Type: TC
Location: 224395 - 225225 (+)
Type: TC
Location: 224395 - 225225 (+)
Gene ID: Rep_963_c_67_203
Type: TF
Location: 225321 - 226079 (+)
Type: TF
Location: 225321 - 226079 (+)
Gene ID: Rep_963_c_67_204
Type: TF
Location: 226121 - 228826 (-)
Type: TF
Location: 226121 - 228826 (-)
Gene ID: Rep_963_c_67_205
Type: CAZyme
Location: 229457 - 231850 (+)
Type: CAZyme
Location: 229457 - 231850 (+)
Gene ID: Rep_963_c_67_206
Type: CAZyme
Location: 231860 - 233947 (+)
Type: CAZyme
Location: 231860 - 233947 (+)
Gene ID: Rep_963_c_67_207
Type: TC
Location: 234044 - 235360 (-)
Type: TC
Location: 234044 - 235360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter werkmanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.