Cluster: Rep_963_CGC39
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_963
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_963_c_43 | Rep_963_c_43_81 | 82355 | 83737 | + | 2.A.2.3.4 |
| CAZyme | Rep_963_c_43 | Rep_963_c_43_82 | 83748 | 86066 | + | GH31_3 |
| TF | Rep_963_c_43 | Rep_963_c_43_83 | 86388 | 87941 | + | HTH_11 | Mga |
| TC | Rep_963_c_43 | Rep_963_c_43_84 | 87968 | 88438 | + | 4.A.2.1.9 |
| TC | Rep_963_c_43 | Rep_963_c_43_85 | 88458 | 88778 | + | 4.A.2.1.9 |
| TC | Rep_963_c_43 | Rep_963_c_43_86 | 88805 | 89896 | + | 4.A.2.1.9 |
Gene ID: Rep_963_c_43_81
Type: TC
Location: 82355 - 83737 (+)
Type: TC
Location: 82355 - 83737 (+)
Gene ID: Rep_963_c_43_82
Type: CAZyme
Location: 83748 - 86066 (+)
Type: CAZyme
Location: 83748 - 86066 (+)
Gene ID: Rep_963_c_43_83
Type: TF
Location: 86388 - 87941 (+)
Type: TF
Location: 86388 - 87941 (+)
Gene ID: Rep_963_c_43_84
Type: TC
Location: 87968 - 88438 (+)
Type: TC
Location: 87968 - 88438 (+)
Gene ID: Rep_963_c_43_85
Type: TC
Location: 88458 - 88778 (+)
Type: TC
Location: 88458 - 88778 (+)
Gene ID: Rep_963_c_43_86
Type: TC
Location: 88805 - 89896 (+)
Type: TC
Location: 88805 - 89896 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter werkmanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_963_c_43_82 | vegetarian > omnivore | 1.48129 | 0.00863 |
| Rep_963_c_43_82 | vegetarian > vegan | 1.45541 | 0.00566 |