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Cluster: Rep_963_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_963_c_43 Rep_963_c_43_39 39648 40832 + 2.A.1.2.26
CAZyme Rep_963_c_43 Rep_963_c_43_40 40889 42271 - GH1
NULL(UNKNOWN) Rep_963_c_43 Rep_963_c_43_41 42366 42659 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_963_c_43 Rep_963_c_43_42 42789 43205 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
TC Rep_963_c_43 Rep_963_c_43_43 43296 46094 + 3.A.23.1.1
TC Rep_963_c_43 Rep_963_c_43_44 46215 46640 + 4.A.6.1.17
TC Rep_963_c_43 Rep_963_c_43_45 46653 47138 + 4.A.6.1.17
TC Rep_963_c_43 Rep_963_c_43_46 47164 47913 + 4.A.6.1.17
TC Rep_963_c_43 Rep_963_c_43_47 47913 48770 + 4.A.6.1.17
Gene ID: Rep_963_c_43_39
Type: TC
Location: 39648 - 40832 (+)
Gene ID: Rep_963_c_43_40
Type: CAZyme
Location: 40889 - 42271 (-)
Gene ID: Rep_963_c_43_41
Type:
Location: 42366 - 42659 (-)
Gene ID: Rep_963_c_43_42
Type: pfam
Location: 42789 - 43205 (+)
Gene ID: Rep_963_c_43_43
Type: TC
Location: 43296 - 46094 (+)
Gene ID: Rep_963_c_43_44
Type: TC
Location: 46215 - 46640 (+)
Gene ID: Rep_963_c_43_45
Type: TC
Location: 46653 - 47138 (+)
Gene ID: Rep_963_c_43_46
Type: TC
Location: 47164 - 47913 (+)
Gene ID: Rep_963_c_43_47
Type: TC
Location: 47913 - 48770 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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