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Cluster: Rep_963_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_963_c_42 Rep_963_c_42_13 12200 12493 - 3.A.1.27.3
TC Rep_963_c_42 Rep_963_c_42_14 12493 13128 - 3.A.1.27.3
TC Rep_963_c_42 Rep_963_c_42_15 13147 13704 - 3.A.1.27.3
TC Rep_963_c_42 Rep_963_c_42_16 13709 14491 - 3.A.1.27.3
TC Rep_963_c_42 Rep_963_c_42_17 14499 15311 - 3.A.1.27.3
TC Rep_963_c_42 Rep_963_c_42_18 15527 16504 + 2.A.19.5.1
STP Rep_963_c_42 Rep_963_c_42_19 16518 17504 + CBS | CBS | SIS
pfam Rep_963_c_42 Rep_963_c_42_20 17525 18091 + Hydrolase_3
TC Rep_963_c_42 Rep_963_c_42_21 18088 18663 + 1.B.42.1.2
TC Rep_963_c_42 Rep_963_c_42_22 18632 19180 + 1.B.42.1.2
TC Rep_963_c_42 Rep_963_c_42_23 19187 19912 + 1.B.42.1.2
pfam Rep_963_c_42 Rep_963_c_42_24 19959 21392 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam Rep_963_c_42 Rep_963_c_42_25 21415 21702 + Ribosomal_S30AE
TC Rep_963_c_42 Rep_963_c_42_26 21786 22277 + 4.A.2.1.7
pfam Rep_963_c_42 Rep_963_c_42_27 22323 23177 + RapZ-like_N | PapZ_C
TC Rep_963_c_42 Rep_963_c_42_28 23174 23446 + 8.A.8.1.5
CAZyme Rep_963_c_42 Rep_963_c_42_29 23513 24232 - GT51
Gene ID: Rep_963_c_42_13
Type: TC
Location: 12200 - 12493 (-)
Gene ID: Rep_963_c_42_14
Type: TC
Location: 12493 - 13128 (-)
Gene ID: Rep_963_c_42_15
Type: TC
Location: 13147 - 13704 (-)
Gene ID: Rep_963_c_42_16
Type: TC
Location: 13709 - 14491 (-)
Gene ID: Rep_963_c_42_17
Type: TC
Location: 14499 - 15311 (-)
Gene ID: Rep_963_c_42_18
Type: TC
Location: 15527 - 16504 (+)
Gene ID: Rep_963_c_42_19
Type: STP
Location: 16518 - 17504 (+)
Gene ID: Rep_963_c_42_20
Type: pfam
Location: 17525 - 18091 (+)
Gene ID: Rep_963_c_42_21
Type: TC
Location: 18088 - 18663 (+)
Gene ID: Rep_963_c_42_22
Type: TC
Location: 18632 - 19180 (+)
Gene ID: Rep_963_c_42_23
Type: TC
Location: 19187 - 19912 (+)
Gene ID: Rep_963_c_42_24
Type: pfam
Location: 19959 - 21392 (+)
Gene ID: Rep_963_c_42_25
Type: pfam
Location: 21415 - 21702 (+)
Gene ID: Rep_963_c_42_26
Type: TC
Location: 21786 - 22277 (+)
Gene ID: Rep_963_c_42_27
Type: pfam
Location: 22323 - 23177 (+)
Gene ID: Rep_963_c_42_28
Type: TC
Location: 23174 - 23446 (+)
Gene ID: Rep_963_c_42_29
Type: CAZyme
Location: 23513 - 24232 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_963_c_42_14 vegetarian > vegan 1.09139 0.03940

🧭 Explore Read Mapping of CGC

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