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Cluster: Rep_963_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_963_c_36 Rep_963_c_36_42 45483 46922 + 1.B.17.3.10
TC Rep_963_c_36 Rep_963_c_36_43 46947 47519 - 9.B.27.2.7
TC Rep_963_c_36 Rep_963_c_36_44 48344 48931 + 9.B.29.3.1
peptidase Rep_963_c_36 Rep_963_c_36_45 49113 50060 + S11.UPW
pfam Rep_963_c_36 Rep_963_c_36_46 50125 51834 - FAD_binding_4 | Lact-deh-memb
CAZyme Rep_963_c_36 Rep_963_c_36_47 52067 54364 + GH3
TC Rep_963_c_36 Rep_963_c_36_48 54588 55505 + 3.A.1.12.15
TC Rep_963_c_36 Rep_963_c_36_49 55521 56687 + 3.A.1.12.15
TC Rep_963_c_36 Rep_963_c_36_50 56680 57627 + 3.A.1.12.15
TC Rep_963_c_36 Rep_963_c_36_51 57611 58342 + 3.A.1.12.15
NULL(UNKNOWN) Rep_963_c_36 Rep_963_c_36_52 58323 58430 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_963_c_36 Rep_963_c_36_53 58482 59213 - MerR
TC Rep_963_c_36 Rep_963_c_36_54 59439 61124 + 9.B.33.1.1
Gene ID: Rep_963_c_36_42
Type: TC
Location: 45483 - 46922 (+)
Gene ID: Rep_963_c_36_43
Type: TC
Location: 46947 - 47519 (-)
Gene ID: Rep_963_c_36_44
Type: TC
Location: 48344 - 48931 (+)
Gene ID: Rep_963_c_36_45
Type: peptidase
Location: 49113 - 50060 (+)
Gene ID: Rep_963_c_36_46
Type: pfam
Location: 50125 - 51834 (-)
Gene ID: Rep_963_c_36_47
Type: CAZyme
Location: 52067 - 54364 (+)
Gene ID: Rep_963_c_36_48
Type: TC
Location: 54588 - 55505 (+)
Gene ID: Rep_963_c_36_49
Type: TC
Location: 55521 - 56687 (+)
Gene ID: Rep_963_c_36_50
Type: TC
Location: 56680 - 57627 (+)
Gene ID: Rep_963_c_36_51
Type: TC
Location: 57611 - 58342 (+)
Gene ID: Rep_963_c_36_52
Type:
Location: 58323 - 58430 (-)
Gene ID: Rep_963_c_36_53
Type: TF
Location: 58482 - 59213 (-)
Gene ID: Rep_963_c_36_54
Type: TC
Location: 59439 - 61124 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_963_c_36_46 vegetarian > vegan 1.17739 0.01424

🧭 Explore Read Mapping of CGC

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