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Cluster: Rep_963_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_963_c_21 Rep_963_c_21_13 10448 11425 + 3.A.15.1.1
pfam Rep_963_c_21 Rep_963_c_21_14 11406 12566 + T2SSL | GspL_C
pfam Rep_963_c_21 Rep_963_c_21_15 12559 13041 + T2SSM
TC Rep_963_c_21 Rep_963_c_21_16 13034 13813 + 3.A.15.2.1
pfam Rep_963_c_21 Rep_963_c_21_17 13860 14336 - Ferritin
pfam Rep_963_c_21 Rep_963_c_21_18 14408 14602 - Fer2_BFD
CAZyme Rep_963_c_21 Rep_963_c_21_19 14737 16992 - GH18
CAZyme Rep_963_c_21 Rep_963_c_21_20 17564 19987 - CBM5 | GH18
Gene ID: Rep_963_c_21_13
Type: TC
Location: 10448 - 11425 (+)
Gene ID: Rep_963_c_21_14
Type: pfam
Location: 11406 - 12566 (+)
Gene ID: Rep_963_c_21_15
Type: pfam
Location: 12559 - 13041 (+)
Gene ID: Rep_963_c_21_16
Type: TC
Location: 13034 - 13813 (+)
Gene ID: Rep_963_c_21_17
Type: pfam
Location: 13860 - 14336 (-)
Gene ID: Rep_963_c_21_18
Type: pfam
Location: 14408 - 14602 (-)
Gene ID: Rep_963_c_21_19
Type: CAZyme
Location: 14737 - 16992 (-)
Gene ID: Rep_963_c_21_20
Type: CAZyme
Location: 17564 - 19987 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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