Cluster: Rep_963_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_963
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_963_c_19 | Rep_963_c_19_28 | 27597 | 28841 | - | 2.A.23.4.1 |
| TC | Rep_963_c_19 | Rep_963_c_19_29 | 29085 | 30128 | - | 2.A.109.1.7 |
| pfam | Rep_963_c_19 | Rep_963_c_19_30 | 30322 | 31320 | - | GFO_IDH_MocA | GFO_IDH_MocA_C3 |
| pfam | Rep_963_c_19 | Rep_963_c_19_31 | 31393 | 31947 | - | YgjP-like |
| CAZyme | Rep_963_c_19 | Rep_963_c_19_32 | 31971 | 33614 | - | CBM91 | GH43_11 |
| TF | Rep_963_c_19 | Rep_963_c_19_33 | 33744 | 34610 | - | HTH_AraC |
| TC | Rep_963_c_19 | Rep_963_c_19_34 | 34730 | 36073 | + | 2.A.2.3.5 |
Gene ID: Rep_963_c_19_28
Type: TC
Location: 27597 - 28841 (-)
Type: TC
Location: 27597 - 28841 (-)
Gene ID: Rep_963_c_19_29
Type: TC
Location: 29085 - 30128 (-)
Type: TC
Location: 29085 - 30128 (-)
Gene ID: Rep_963_c_19_30
Type: pfam
Location: 30322 - 31320 (-)
Type: pfam
Location: 30322 - 31320 (-)
Gene ID: Rep_963_c_19_31
Type: pfam
Location: 31393 - 31947 (-)
Type: pfam
Location: 31393 - 31947 (-)
Gene ID: Rep_963_c_19_32
Type: CAZyme
Location: 31971 - 33614 (-)
Type: CAZyme
Location: 31971 - 33614 (-)
Gene ID: Rep_963_c_19_33
Type: TF
Location: 33744 - 34610 (-)
Type: TF
Location: 33744 - 34610 (-)
Gene ID: Rep_963_c_19_34
Type: TC
Location: 34730 - 36073 (+)
Type: TC
Location: 34730 - 36073 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter werkmanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.