Cluster: Rep_963_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_963
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_963_c_2 | Rep_963_c_2_3 | 2130 | 3305 | + | 2.A.1.2.65 |
| pfam | Rep_963_c_2 | Rep_963_c_2_4 | 3458 | 4237 | + | Exo_endo_phos |
| pfam | Rep_963_c_2 | Rep_963_c_2_5 | 4316 | 5086 | + | Ubie_methyltran | Methyltransf_29 | TehB | Methyltransf_8 | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_963_c_2 | Rep_963_c_2_6 | 5136 | 6290 | - | GH23 |
Gene ID: Rep_963_c_2_3
Type: TC
Location: 2130 - 3305 (+)
Type: TC
Location: 2130 - 3305 (+)
Gene ID: Rep_963_c_2_4
Type: pfam
Location: 3458 - 4237 (+)
Type: pfam
Location: 3458 - 4237 (+)
Gene ID: Rep_963_c_2_5
Type: pfam
Location: 4316 - 5086 (+)
Type: pfam
Location: 4316 - 5086 (+)
Gene ID: Rep_963_c_2_6
Type: CAZyme
Location: 5136 - 6290 (-)
Type: CAZyme
Location: 5136 - 6290 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter werkmanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.