Cluster: Rep_960_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_24 | Rep_960_c_24_35 | 36862 | 38295 | - | GH1 |
| TF | Rep_960_c_24 | Rep_960_c_24_36 | 38415 | 39143 | - | HTH_6 |
| pfam | Rep_960_c_24 | Rep_960_c_24_37 | 39151 | 39507 | + | ASCH |
| TC | Rep_960_c_24 | Rep_960_c_24_38 | 39670 | 40329 | + | 1.C.113.1.10 |
Gene ID: Rep_960_c_24_35
Type: CAZyme
Location: 36862 - 38295 (-)
Type: CAZyme
Location: 36862 - 38295 (-)
Gene ID: Rep_960_c_24_36
Type: TF
Location: 38415 - 39143 (-)
Type: TF
Location: 38415 - 39143 (-)
Gene ID: Rep_960_c_24_37
Type: pfam
Location: 39151 - 39507 (+)
Type: pfam
Location: 39151 - 39507 (+)
Gene ID: Rep_960_c_24_38
Type: TC
Location: 39670 - 40329 (+)
Type: TC
Location: 39670 - 40329 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_960_c_24_35 | vegan > omnivore | 1.20043 | 0.03783 |