Cluster: Rep_960_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_23 | Rep_960_c_23_28 | 26031 | 27395 | + | 4.A.1.2.7 |
| pfam | Rep_960_c_23 | Rep_960_c_23_29 | 27399 | 28034 | + | HAD |
| pfam | Rep_960_c_23 | Rep_960_c_23_30 | 28099 | 28596 | + | dCMP_cyt_deam_1 | MafB19-deam |
| CAZyme | Rep_960_c_23 | Rep_960_c_23_31 | 28612 | 30162 | - | GH23 |
Gene ID: Rep_960_c_23_28
Type: TC
Location: 26031 - 27395 (+)
Type: TC
Location: 26031 - 27395 (+)
Gene ID: Rep_960_c_23_29
Type: pfam
Location: 27399 - 28034 (+)
Type: pfam
Location: 27399 - 28034 (+)
Gene ID: Rep_960_c_23_30
Type: pfam
Location: 28099 - 28596 (+)
Type: pfam
Location: 28099 - 28596 (+)
Gene ID: Rep_960_c_23_31
Type: CAZyme
Location: 28612 - 30162 (-)
Type: CAZyme
Location: 28612 - 30162 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.