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Cluster: Rep_960_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_960_c_183 Rep_960_c_183_3 3703 5073 + 2.A.3.1.3
TC Rep_960_c_183 Rep_960_c_183_4 5232 6638 + 2.A.2.3.4
CAZyme Rep_960_c_183 Rep_960_c_183_5 6638 7588 + GH43_26
TC Rep_960_c_183 Rep_960_c_183_6 7636 8490 - 9.B.125.1.1
pfam Rep_960_c_183 Rep_960_c_183_7 8487 9050 - Amidase_2
pfam Rep_960_c_183 Rep_960_c_183_8 9138 10037 + QRPTase_C | QRPTase_N
TC Rep_960_c_183 Rep_960_c_183_9 10244 10681 + 3.A.15.2.1
TC Rep_960_c_183 Rep_960_c_183_10 10691 12076 + 3.A.15.2.1
TC Rep_960_c_183 Rep_960_c_183_11 12066 13268 + 3.A.15.2.1
Gene ID: Rep_960_c_183_3
Type: TC
Location: 3703 - 5073 (+)
Gene ID: Rep_960_c_183_4
Type: TC
Location: 5232 - 6638 (+)
Gene ID: Rep_960_c_183_5
Type: CAZyme
Location: 6638 - 7588 (+)
Gene ID: Rep_960_c_183_6
Type: TC
Location: 7636 - 8490 (-)
Gene ID: Rep_960_c_183_7
Type: pfam
Location: 8487 - 9050 (-)
Gene ID: Rep_960_c_183_8
Type: pfam
Location: 9138 - 10037 (+)
Gene ID: Rep_960_c_183_9
Type: TC
Location: 10244 - 10681 (+)
Gene ID: Rep_960_c_183_10
Type: TC
Location: 10691 - 12076 (+)
Gene ID: Rep_960_c_183_11
Type: TC
Location: 12066 - 13268 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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