Cluster: Rep_960_CGC50
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_182 | Rep_960_c_182_6 | 4703 | 5770 | - | GT28 |
| TC | Rep_960_c_182 | Rep_960_c_182_7 | 5767 | 7011 | - | 2.A.103.1.1 |
| pfam | Rep_960_c_182 | Rep_960_c_182_8 | 7011 | 8327 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | Rep_960_c_182 | Rep_960_c_182_9 | 8330 | 9412 | - | 9.B.146.1.6 |
Gene ID: Rep_960_c_182_6
Type: CAZyme
Location: 4703 - 5770 (-)
Type: CAZyme
Location: 4703 - 5770 (-)
Gene ID: Rep_960_c_182_7
Type: TC
Location: 5767 - 7011 (-)
Type: TC
Location: 5767 - 7011 (-)
Gene ID: Rep_960_c_182_8
Type: pfam
Location: 7011 - 8327 (-)
Type: pfam
Location: 7011 - 8327 (-)
Gene ID: Rep_960_c_182_9
Type: TC
Location: 8330 - 9412 (-)
Type: TC
Location: 8330 - 9412 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.