Cluster: Rep_960_CGC42
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- CGC Family ID: CGCFAM_05639
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_153 | Rep_960_c_153_48 | 52083 | 52910 | - | 3.A.1.17.1 |
| TC | Rep_960_c_153 | Rep_960_c_153_49 | 52907 | 53674 | - | 3.A.1.17.1 |
| TC | Rep_960_c_153 | Rep_960_c_153_50 | 53686 | 54648 | - | 3.A.1.17.1 |
| TF | Rep_960_c_153 | Rep_960_c_153_51 | 55193 | 55822 | + | GerE |
| STP | Rep_960_c_153 | Rep_960_c_153_52 | 55822 | 57363 | + | HATPase_c | MASE1 |
| TC | Rep_960_c_153 | Rep_960_c_153_53 | 57448 | 58752 | + | 2.A.1.4.4 |
| TC | Rep_960_c_153 | Rep_960_c_153_54 | 58749 | 59780 | + | 3.A.1.20.2 |
| TC | Rep_960_c_153 | Rep_960_c_153_55 | 59919 | 61997 | + | 3.A.1.20.2 |
| TC | Rep_960_c_153 | Rep_960_c_153_56 | 62009 | 63055 | + | 3.A.1.20.2 |
| pfam | Rep_960_c_153 | Rep_960_c_153_57 | 63096 | 64028 | - | S-methyl_trans |
| TC | Rep_960_c_153 | Rep_960_c_153_58 | 64382 | 68155 | - | 1.B.12.1.2 |
| pfam | Rep_960_c_153 | Rep_960_c_153_59 | 68740 | 69516 | + | Lactamase_B_2 | Lactamase_B_3 |
| TF | Rep_960_c_153 | Rep_960_c_153_60 | 69536 | 70504 | + | HTH_AraC |
| CAZyme | Rep_960_c_153 | Rep_960_c_153_61 | 70605 | 73682 | + | GH2 |
| TC | Rep_960_c_153 | Rep_960_c_153_62 | 73772 | 75658 | - | 4.C.1.1.6 |
Gene ID: Rep_960_c_153_48
Type: TC
Location: 52083 - 52910 (-)
Type: TC
Location: 52083 - 52910 (-)
Gene ID: Rep_960_c_153_49
Type: TC
Location: 52907 - 53674 (-)
Type: TC
Location: 52907 - 53674 (-)
Gene ID: Rep_960_c_153_50
Type: TC
Location: 53686 - 54648 (-)
Type: TC
Location: 53686 - 54648 (-)
Gene ID: Rep_960_c_153_51
Type: TF
Location: 55193 - 55822 (+)
Type: TF
Location: 55193 - 55822 (+)
Gene ID: Rep_960_c_153_52
Type: STP
Location: 55822 - 57363 (+)
Type: STP
Location: 55822 - 57363 (+)
Gene ID: Rep_960_c_153_53
Type: TC
Location: 57448 - 58752 (+)
Type: TC
Location: 57448 - 58752 (+)
Gene ID: Rep_960_c_153_54
Type: TC
Location: 58749 - 59780 (+)
Type: TC
Location: 58749 - 59780 (+)
Gene ID: Rep_960_c_153_55
Type: TC
Location: 59919 - 61997 (+)
Type: TC
Location: 59919 - 61997 (+)
Gene ID: Rep_960_c_153_56
Type: TC
Location: 62009 - 63055 (+)
Type: TC
Location: 62009 - 63055 (+)
Gene ID: Rep_960_c_153_57
Type: pfam
Location: 63096 - 64028 (-)
Type: pfam
Location: 63096 - 64028 (-)
Gene ID: Rep_960_c_153_58
Type: TC
Location: 64382 - 68155 (-)
Type: TC
Location: 64382 - 68155 (-)
Gene ID: Rep_960_c_153_59
Type: pfam
Location: 68740 - 69516 (+)
Type: pfam
Location: 68740 - 69516 (+)
Gene ID: Rep_960_c_153_60
Type: TF
Location: 69536 - 70504 (+)
Type: TF
Location: 69536 - 70504 (+)
Gene ID: Rep_960_c_153_61
Type: CAZyme
Location: 70605 - 73682 (+)
Type: CAZyme
Location: 70605 - 73682 (+)
Gene ID: Rep_960_c_153_62
Type: TC
Location: 73772 - 75658 (-)
Type: TC
Location: 73772 - 75658 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.