Cluster: Rep_960_CGC38
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_960
- CGC Family ID: CGCFAM_00261
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_147 | Rep_960_c_147_28 | 30562 | 32268 | + | GH37 |
| TC | Rep_960_c_147 | Rep_960_c_147_29 | 32322 | 34433 | - | 1.B.14.1.2 |
| TC | Rep_960_c_147 | Rep_960_c_147_30 | 34556 | 34810 | - | 1.E.43.1.1 |
| pfam | Rep_960_c_147 | Rep_960_c_147_31 | 35014 | 35748 | + | PilZ | PilZN |
| CAZyme | Rep_960_c_147 | Rep_960_c_147_32 | 35749 | 36360 | - | GH23 |
| peptidase | Rep_960_c_147 | Rep_960_c_147_33 | 36499 | 37413 | + | S66.UPW |
| TC | Rep_960_c_147 | Rep_960_c_147_34 | 37511 | 39247 | + | 2.A.36.6.11 |
Gene ID: Rep_960_c_147_28
Type: CAZyme
Location: 30562 - 32268 (+)
Type: CAZyme
Location: 30562 - 32268 (+)
Gene ID: Rep_960_c_147_29
Type: TC
Location: 32322 - 34433 (-)
Type: TC
Location: 32322 - 34433 (-)
Gene ID: Rep_960_c_147_30
Type: TC
Location: 34556 - 34810 (-)
Type: TC
Location: 34556 - 34810 (-)
Gene ID: Rep_960_c_147_31
Type: pfam
Location: 35014 - 35748 (+)
Type: pfam
Location: 35014 - 35748 (+)
Gene ID: Rep_960_c_147_32
Type: CAZyme
Location: 35749 - 36360 (-)
Type: CAZyme
Location: 35749 - 36360 (-)
Gene ID: Rep_960_c_147_33
Type: peptidase
Location: 36499 - 37413 (+)
Type: peptidase
Location: 36499 - 37413 (+)
Gene ID: Rep_960_c_147_34
Type: TC
Location: 37511 - 39247 (+)
Type: TC
Location: 37511 - 39247 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.