Cluster: Rep_960_CGC37
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_146 | Rep_960_c_146_74 | 76386 | 77495 | + | 2.A.45.2.5 |
| peptidase | Rep_960_c_146 | Rep_960_c_146_75 | 77561 | 78481 | - | C82.UPB |
| TC | Rep_960_c_146 | Rep_960_c_146_76 | 78699 | 80294 | + | 3.A.1.121.4 |
| CAZyme | Rep_960_c_146 | Rep_960_c_146_77 | 80476 | 82839 | - | GH31_2 |
| TC | Rep_960_c_146 | Rep_960_c_146_78 | 82857 | 84158 | - | 2.A.1.14.2 |
Gene ID: Rep_960_c_146_74
Type: TC
Location: 76386 - 77495 (+)
Type: TC
Location: 76386 - 77495 (+)
Gene ID: Rep_960_c_146_75
Type: peptidase
Location: 77561 - 78481 (-)
Type: peptidase
Location: 77561 - 78481 (-)
Gene ID: Rep_960_c_146_76
Type: TC
Location: 78699 - 80294 (+)
Type: TC
Location: 78699 - 80294 (+)
Gene ID: Rep_960_c_146_77
Type: CAZyme
Location: 80476 - 82839 (-)
Type: CAZyme
Location: 80476 - 82839 (-)
Gene ID: Rep_960_c_146_78
Type: TC
Location: 82857 - 84158 (-)
Type: TC
Location: 82857 - 84158 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_960_c_146_78 | vegetarian > omnivore | 1.72828 | 0.04709 |