Cluster: Rep_960_CGC36
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- CGC Family ID: CGCFAM_00891
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_146 | Rep_960_c_146_18 | 19720 | 19869 | + | 2.A.6.2.49 |
| TC | Rep_960_c_146 | Rep_960_c_146_19 | 20101 | 20874 | + | 3.A.1.8.1 |
| TC | Rep_960_c_146 | Rep_960_c_146_20 | 20874 | 21563 | + | 3.A.1.8.1 |
| TC | Rep_960_c_146 | Rep_960_c_146_21 | 21566 | 22624 | + | 3.A.1.8.1 |
| pfam | Rep_960_c_146 | Rep_960_c_146_22 | 22625 | 23443 | - | Hydrolase | S6PP | S6PP | Hydrolase_3 |
| pfam | Rep_960_c_146 | Rep_960_c_146_23 | 23606 | 24601 | + | Lactonase |
| CAZyme | Rep_960_c_146 | Rep_960_c_146_24 | 24668 | 25951 | - | CE8 |
Gene ID: Rep_960_c_146_18
Type: TC
Location: 19720 - 19869 (+)
Type: TC
Location: 19720 - 19869 (+)
Gene ID: Rep_960_c_146_19
Type: TC
Location: 20101 - 20874 (+)
Type: TC
Location: 20101 - 20874 (+)
Gene ID: Rep_960_c_146_20
Type: TC
Location: 20874 - 21563 (+)
Type: TC
Location: 20874 - 21563 (+)
Gene ID: Rep_960_c_146_21
Type: TC
Location: 21566 - 22624 (+)
Type: TC
Location: 21566 - 22624 (+)
Gene ID: Rep_960_c_146_22
Type: pfam
Location: 22625 - 23443 (-)
Type: pfam
Location: 22625 - 23443 (-)
Gene ID: Rep_960_c_146_23
Type: pfam
Location: 23606 - 24601 (+)
Type: pfam
Location: 23606 - 24601 (+)
Gene ID: Rep_960_c_146_24
Type: CAZyme
Location: 24668 - 25951 (-)
Type: CAZyme
Location: 24668 - 25951 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.