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Cluster: Rep_960_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_960_c_144 Rep_960_c_144_7 6642 8822 + AA2 | AA2
TC Rep_960_c_144 Rep_960_c_144_8 8931 9836 + 2.A.7.3.26
pfam Rep_960_c_144 Rep_960_c_144_9 9881 10984 - Fe-ADH | Fe-ADH_2
pfam Rep_960_c_144 Rep_960_c_144_10 10997 11659 - TAL_FSA
TC Rep_960_c_144 Rep_960_c_144_11 11671 14172 - 4.A.2.1.10
TC Rep_960_c_144 Rep_960_c_144_12 14481 15560 + 4.A.2.1.10
TC Rep_960_c_144 Rep_960_c_144_13 15576 15896 + 4.A.2.1.10
pfam Rep_960_c_144 Rep_960_c_144_14 15999 18296 + Gly_radical | PFL-like
pfam Rep_960_c_144 Rep_960_c_144_15 18262 19140 + Radical_SAM | Fer4_12
TC Rep_960_c_144 Rep_960_c_144_16 19142 19498 + 4.A.2.1.10
Gene ID: Rep_960_c_144_7
Type: CAZyme
Location: 6642 - 8822 (+)
Gene ID: Rep_960_c_144_8
Type: TC
Location: 8931 - 9836 (+)
Gene ID: Rep_960_c_144_9
Type: pfam
Location: 9881 - 10984 (-)
Gene ID: Rep_960_c_144_10
Type: pfam
Location: 10997 - 11659 (-)
Gene ID: Rep_960_c_144_11
Type: TC
Location: 11671 - 14172 (-)
Gene ID: Rep_960_c_144_12
Type: TC
Location: 14481 - 15560 (+)
Gene ID: Rep_960_c_144_13
Type: TC
Location: 15576 - 15896 (+)
Gene ID: Rep_960_c_144_14
Type: pfam
Location: 15999 - 18296 (+)
Gene ID: Rep_960_c_144_15
Type: pfam
Location: 18262 - 19140 (+)
Gene ID: Rep_960_c_144_16
Type: TC
Location: 19142 - 19498 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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