Cluster: Rep_960_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_103 | Rep_960_c_103_71 | 79059 | 80354 | + | 2.A.1.6.7 |
| pfam | Rep_960_c_103 | Rep_960_c_103_72 | 80407 | 80739 | - | YbfN |
| TC | Rep_960_c_103 | Rep_960_c_103_73 | 80789 | 82195 | - | 1.B.25.1.13 |
| pfam | Rep_960_c_103 | Rep_960_c_103_74 | 82631 | 84298 | - | tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2 |
| TC | Rep_960_c_103 | Rep_960_c_103_75 | 84487 | 86463 | - | 4.A.1.1.2 |
| pfam | Rep_960_c_103 | Rep_960_c_103_76 | 86830 | 87630 | + | Glucosamine_iso |
| CAZyme | Rep_960_c_103 | Rep_960_c_103_77 | 87651 | 88838 | + | CE9 |
Gene ID: Rep_960_c_103_71
Type: TC
Location: 79059 - 80354 (+)
Type: TC
Location: 79059 - 80354 (+)
Gene ID: Rep_960_c_103_72
Type: pfam
Location: 80407 - 80739 (-)
Type: pfam
Location: 80407 - 80739 (-)
Gene ID: Rep_960_c_103_73
Type: TC
Location: 80789 - 82195 (-)
Type: TC
Location: 80789 - 82195 (-)
Gene ID: Rep_960_c_103_74
Type: pfam
Location: 82631 - 84298 (-)
Type: pfam
Location: 82631 - 84298 (-)
Gene ID: Rep_960_c_103_75
Type: TC
Location: 84487 - 86463 (-)
Type: TC
Location: 84487 - 86463 (-)
Gene ID: Rep_960_c_103_76
Type: pfam
Location: 86830 - 87630 (+)
Type: pfam
Location: 86830 - 87630 (+)
Gene ID: Rep_960_c_103_77
Type: CAZyme
Location: 87651 - 88838 (+)
Type: CAZyme
Location: 87651 - 88838 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.