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Cluster: Rep_960_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_960_c_103 Rep_960_c_103_1 3 1229 - 2.C.1.2.1
TC Rep_960_c_103 Rep_960_c_103_2 1361 2569 - 2.C.1.2.1
TC Rep_960_c_103 Rep_960_c_103_3 2632 3060 - 1.A.30.2.2
TC Rep_960_c_103 Rep_960_c_103_4 3064 3756 - 1.A.30.2.2
pfam Rep_960_c_103 Rep_960_c_103_5 3753 4157 - Acyl-ACP_TE | 4HBT | 4HBT_2
TC Rep_960_c_103 Rep_960_c_103_6 4474 4767 - 8.A.79.1.1
TC Rep_960_c_103 Rep_960_c_103_7 4767 4880 - 9.B.85.1.1
TC Rep_960_c_103 Rep_960_c_103_8 4895 6034 - 3.D.4.3.2
TC Rep_960_c_103 Rep_960_c_103_9 6050 7618 - 3.D.4.3.2
CAZyme Rep_960_c_103 Rep_960_c_103_10 8300 10933 - GH38
TC Rep_960_c_103 Rep_960_c_103_11 10953 12869 - 4.A.2.1.3
Gene ID: Rep_960_c_103_1
Type: TC
Location: 3 - 1229 (-)
Gene ID: Rep_960_c_103_2
Type: TC
Location: 1361 - 2569 (-)
Gene ID: Rep_960_c_103_3
Type: TC
Location: 2632 - 3060 (-)
Gene ID: Rep_960_c_103_4
Type: TC
Location: 3064 - 3756 (-)
Gene ID: Rep_960_c_103_5
Type: pfam
Location: 3753 - 4157 (-)
Gene ID: Rep_960_c_103_6
Type: TC
Location: 4474 - 4767 (-)
Gene ID: Rep_960_c_103_7
Type: TC
Location: 4767 - 4880 (-)
Gene ID: Rep_960_c_103_8
Type: TC
Location: 4895 - 6034 (-)
Gene ID: Rep_960_c_103_9
Type: TC
Location: 6050 - 7618 (-)
Gene ID: Rep_960_c_103_10
Type: CAZyme
Location: 8300 - 10933 (-)
Gene ID: Rep_960_c_103_11
Type: TC
Location: 10953 - 12869 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_960_c_103_6 omnivore > vegetarian 2.16555 0.03523

🧭 Explore Read Mapping of CGC

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