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Cluster: Rep_960_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_960_c_100 Rep_960_c_100_48 47371 47697 + 9.B.32.1.2
TC Rep_960_c_100 Rep_960_c_100_49 47700 48836 + 8.A.1.1.4
TF Rep_960_c_100 Rep_960_c_100_50 48833 49807 - HTH_1
TC Rep_960_c_100 Rep_960_c_100_51 49930 50670 + 9.B.99.1.1
TF Rep_960_c_100 Rep_960_c_100_52 51150 51557 + Trans_reg_C
TC Rep_960_c_100 Rep_960_c_100_53 51797 52270 + 3.D.1.9.2
STP Rep_960_c_100 Rep_960_c_100_54 52305 53558 - Aminotran_1_2
CAZyme Rep_960_c_100 Rep_960_c_100_55 53737 55767 - GH13_19
CAZyme Rep_960_c_100 Rep_960_c_100_56 56084 56908 + GH73
TF Rep_960_c_100 Rep_960_c_100_57 56959 58137 - HTH_AraC | HTH_AraC
TC Rep_960_c_100 Rep_960_c_100_58 58221 59402 - 3.A.1.2.4
TC Rep_960_c_100 Rep_960_c_100_59 59380 60921 - 3.A.1.2.4
TC Rep_960_c_100 Rep_960_c_100_60 61000 61992 - 3.A.1.2.4
NULL(UNKNOWN) Rep_960_c_100 Rep_960_c_100_61 62356 63678 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_960_c_100 Rep_960_c_100_62 63776 65230 + FGGY_N | FGGY_C
TC Rep_960_c_100 Rep_960_c_100_63 65398 65745 + 9.B.44.1.1
TC Rep_960_c_100 Rep_960_c_100_64 65876 66871 - 9.B.97.1.1
Gene ID: Rep_960_c_100_48
Type: TC
Location: 47371 - 47697 (+)
Gene ID: Rep_960_c_100_49
Type: TC
Location: 47700 - 48836 (+)
Gene ID: Rep_960_c_100_50
Type: TF
Location: 48833 - 49807 (-)
Gene ID: Rep_960_c_100_51
Type: TC
Location: 49930 - 50670 (+)
Gene ID: Rep_960_c_100_52
Type: TF
Location: 51150 - 51557 (+)
Gene ID: Rep_960_c_100_53
Type: TC
Location: 51797 - 52270 (+)
Gene ID: Rep_960_c_100_54
Type: STP
Location: 52305 - 53558 (-)
Gene ID: Rep_960_c_100_55
Type: CAZyme
Location: 53737 - 55767 (-)
Gene ID: Rep_960_c_100_56
Type: CAZyme
Location: 56084 - 56908 (+)
Gene ID: Rep_960_c_100_57
Type: TF
Location: 56959 - 58137 (-)
Gene ID: Rep_960_c_100_58
Type: TC
Location: 58221 - 59402 (-)
Gene ID: Rep_960_c_100_59
Type: TC
Location: 59380 - 60921 (-)
Gene ID: Rep_960_c_100_60
Type: TC
Location: 61000 - 61992 (-)
Gene ID: Rep_960_c_100_61
Type:
Location: 62356 - 63678 (+)
Gene ID: Rep_960_c_100_62
Type: pfam
Location: 63776 - 65230 (+)
Gene ID: Rep_960_c_100_63
Type: TC
Location: 65398 - 65745 (+)
Gene ID: Rep_960_c_100_64
Type: TC
Location: 65876 - 66871 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_960_c_100_62 vegetarian > vegan 3.40450 0.01479

🧭 Explore Read Mapping of CGC

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