Cluster: Rep_960_CGC26
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 11
- Substrate:
- Genome ID: Rep_960
- CGC Family ID: CGCFAM_00698
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_100 | Rep_960_c_100_5 | 1817 | 3094 | - | GT30 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_6 | 3506 | 4576 | + | GT9 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_7 | 4573 | 5697 | + | GT4 |
| pfam | Rep_960_c_100 | Rep_960_c_100_8 | 5690 | 6487 | + | Kdo |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_9 | 6512 | 7453 | + | GT52 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_10 | 7487 | 8593 | + | GT4 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_11 | 8599 | 9612 | + | GT8 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_12 | 9633 | 10649 | + | GT8 |
| pfam | Rep_960_c_100 | Rep_960_c_100_13 | 10663 | 11361 | + | ABC1 | WaaY |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_14 | 11542 | 12396 | + | GT73 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_15 | 12434 | 13510 | + | GT9 |
| TC | Rep_960_c_100 | Rep_960_c_100_16 | 13537 | 14808 | - | 9.B.67.5.1 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_17 | 14819 | 15781 | - | GT9 |
| CAZyme | Rep_960_c_100 | Rep_960_c_100_18 | 15785 | 16831 | - | GT9 |
Gene ID: Rep_960_c_100_5
Type: CAZyme
Location: 1817 - 3094 (-)
Type: CAZyme
Location: 1817 - 3094 (-)
Gene ID: Rep_960_c_100_6
Type: CAZyme
Location: 3506 - 4576 (+)
Type: CAZyme
Location: 3506 - 4576 (+)
Gene ID: Rep_960_c_100_7
Type: CAZyme
Location: 4573 - 5697 (+)
Type: CAZyme
Location: 4573 - 5697 (+)
Gene ID: Rep_960_c_100_8
Type: pfam
Location: 5690 - 6487 (+)
Type: pfam
Location: 5690 - 6487 (+)
Gene ID: Rep_960_c_100_9
Type: CAZyme
Location: 6512 - 7453 (+)
Type: CAZyme
Location: 6512 - 7453 (+)
Gene ID: Rep_960_c_100_10
Type: CAZyme
Location: 7487 - 8593 (+)
Type: CAZyme
Location: 7487 - 8593 (+)
Gene ID: Rep_960_c_100_11
Type: CAZyme
Location: 8599 - 9612 (+)
Type: CAZyme
Location: 8599 - 9612 (+)
Gene ID: Rep_960_c_100_12
Type: CAZyme
Location: 9633 - 10649 (+)
Type: CAZyme
Location: 9633 - 10649 (+)
Gene ID: Rep_960_c_100_13
Type: pfam
Location: 10663 - 11361 (+)
Type: pfam
Location: 10663 - 11361 (+)
Gene ID: Rep_960_c_100_14
Type: CAZyme
Location: 11542 - 12396 (+)
Type: CAZyme
Location: 11542 - 12396 (+)
Gene ID: Rep_960_c_100_15
Type: CAZyme
Location: 12434 - 13510 (+)
Type: CAZyme
Location: 12434 - 13510 (+)
Gene ID: Rep_960_c_100_16
Type: TC
Location: 13537 - 14808 (-)
Type: TC
Location: 13537 - 14808 (-)
Gene ID: Rep_960_c_100_17
Type: CAZyme
Location: 14819 - 15781 (-)
Type: CAZyme
Location: 14819 - 15781 (-)
Gene ID: Rep_960_c_100_18
Type: CAZyme
Location: 15785 - 16831 (-)
Type: CAZyme
Location: 15785 - 16831 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.